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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2163-RB through 18771 annotations produced 2 hits



polyA-binding protein II (Pabp2):

Annotation Number : CG2163
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005648
Gbrowse : chr2R:4018917-4020985 (+) // 100.0 //
Probeset : 1631244_a_at
Accessions : protein= NP_476902; /// NP_724648;, nucleotide= NM_057554; /// NM_165589;
Pathway : via spliceosome // inferred by curator /// 0006378 // mRNA polyadenylation // inferred from direct assay /// 0006378 //
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for FBgn0005648.
BDGP gene expression has embryonic in situ data for Pabp2: 8 pix of staining in 1 body parts.
Homophila reports that CG2163 is a close match (2e-47) to human gene PAB2;PABP2;PABPN1 (NP_004634), a gene associated with Oculopharyngeal muscular dystrophy, 164300 (3).
BioGrid reports that CG2163 interacts with CG2163 CG7010 CG8065 .
TRiP has 1 RNAi stocks for FBgn0005648 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005648 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain98 34 of 4 0.50Down
Head101 94 of 4 0.50Down
Eye140 64 of 4 0.73Down
Thoracicoabdominal ganglion110 54 of 4 0.60Down
Salivary gland176 144 of 4 0.92None
Crop189 54 of 4 1.00None
Midgut160 104 of 4 0.80Down
Tubule111 104 of 4 0.60Down
Hindgut161 44 of 4 0.80Down
Heart158 84 of 4 0.82Down
Fat body144 124 of 4 0.75Down
Ovary301 114 of 4 1.60Up
Testis205 64 of 4 1.10None
Male accessory glands227 204 of 4 1.20None
Virgin spermatheca57 14 of 4 0.30Down
Mated spermatheca77 34 of 4 0.40Down
Adult carcass106 54 of 4 0.60Down
Larval CNS711 224 of 4 3.69Up
Larval Salivary gland498 584 of 4 2.59Up
Larval midgut179 24 of 4 0.93None
Larval tubule268 84 of 4 1.40Up
Larval hindgut250 104 of 4 1.30Up
Larval fat body183 184 of 4 0.90None
Larval trachea412 744 of 4 2.14Up
Larval carcass279 84 of 4 1.45Up
S2 cells (growing)460 164 of 4 2.39Up
Whole fly192 74 of 4



polyA-binding protein II (Pabp2):

Annotation Number : CG2163
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005648
Gbrowse : chr2R:4018917-4020985 (+) // 100.0 //
Probeset : 1629694_at
Accessions : protein= NP_476902; /// NP_724648;, nucleotide= NM_057554; /// NM_165589;
Pathway : via spliceosome // inferred by curator /// 0006378 // mRNA polyadenylation // inferred from direct assay /// 0006378 //
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for FBgn0005648.
BDGP gene expression has embryonic in situ data for Pabp2: 8 pix of staining in 1 body parts.
Homophila reports that CG2163 is a close match (2e-47) to human gene PAB2;PABP2;PABPN1 (NP_004634), a gene associated with Oculopharyngeal muscular dystrophy, 164300 (3).
BioGrid reports that CG2163 interacts with CG2163 CG7010 CG8065 .
TRiP has 1 RNAi stocks for FBgn0005648 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005648 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 14 of 4 3.70Up
Head16 14 of 4 1.10None
Eye14 14 of 4 1.02None
Thoracicoabdominal ganglion32 24 of 4 2.30Up
Salivary gland39 54 of 4 2.80Up
Crop36 14 of 4 2.50Up
Midgut14 14 of 4 1.00None
Tubule15 04 of 4 1.10Up
Hindgut25 24 of 4 1.80Up
Heart13 23 of 4 0.98None
Fat body26 54 of 4 1.89Up
Ovary24 14 of 4 1.70Up
Testis13 14 of 4 0.90None
Male accessory glands74 14 of 4 5.20Up
Virgin spermatheca43 34 of 4 3.08Up
Mated spermatheca31 34 of 4 2.22Up
Adult carcass15 13 of 4 1.10None
Larval CNS116 214 of 4 8.14Up
Larval Salivary gland61 14 of 4 4.27Up
Larval midgut16 24 of 4 1.14None
Larval tubule21 24 of 4 1.50Up
Larval hindgut25 24 of 4 1.79Up
Larval fat body30 34 of 4 2.10Up
Larval trachea26 34 of 4 1.88Up
Larval carcass19 24 of 4 1.37None
S2 cells (growing)44 24 of 4 3.13Up
Whole fly14 04 of 4

Looking for CG2163-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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