FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG2177-RA through 18771 annotations produced 1 hits

(CG2177):

Annotation Number : CG2177
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039902
Gbrowse : chr4:331557-334534 (-) // 100.0 //
Probeset : 1626088_at
Accessions : protein= NP_001137855; /// NP_651919; /// NP_995594;, nucleotide= NM_001144383; /// NM_143662; /// NM_205872;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation
FlyMine data for FBgn0039902.
BioGrid reports that CG2177 interacts with CG9527 .
VDRC has 2 RNAi stocks for FBgn0039902 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	23 ± 3	4 of 4	1.50	None
Head	30 ± 13	3 of 4	2.00	None
Eye	5 ± 0	0 of 4	0.34	None
Thoracicoabdominal ganglion	96 ± 5	4 of 4	6.20	Up
Salivary gland	19 ± 6	1 of 4	1.27	None
Crop	69 ± 6	4 of 4	4.50	Up
Midgut	16 ± 6	1 of 4	1.00	None
Tubule	103 ± 7	4 of 4	6.70	Up
Hindgut	16 ± 2	2 of 4	1.00	None
Heart	7 ± 1	0 of 4	0.47	None
Fat body	10 ± 5	0 of 4	0.65	None
Ovary	24 ± 4	4 of 4	1.60	None
Testis	10 ± 0	2 of 4	0.70	None
Male accessory glands	99 ± 4	4 of 4	6.40	Up
Virgin spermatheca	12 ± 3	1 of 4	0.78	None
Mated spermatheca	13 ± 2	1 of 4	0.87	None
Adult carcass	56 ± 5	4 of 4	3.70	Up
Larval CNS	8 ± 3	0 of 4	0.55	None
Larval Salivary gland	1 ± 0	0 of 4	0.12	Down
Larval midgut	4 ± 0	0 of 4	0.31	None
Larval tubule	96 ± 9	4 of 4	6.20	Up
Larval hindgut	8 ± 2	1 of 4	0.56	None
Larval fat body	84 ± 19	4 of 4	5.40	Up
Larval trachea	6 ± 4	0 of 4	0.41	None
Larval carcass	8 ± 4	0 of 4	0.55	None
S2 cells (growing)	486 ± 7	4 of 4	31.33	Up
Whole fly	15 ± 3	3 of 4

Looking for CG2177-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720