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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2184-RA through 18771 annotations produced 1 hits



myosin regulatory light chain (Mlc2):

Annotation Number : CG2184
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002773
Gbrowse : chr3R:25997159-26000273 (-) // 100.0 //
Probeset : 1625071_a_at
Accessions : protein= NP_524586; /// NP_733353;, nucleotide= NM_079847; /// NM_170474;
Pathway : 0005859 // muscle myosin complex // non-traceable author statement /// 0016459 // myosin complex // inferred from sequen
Interpro : "0000146 // microfilament motor activity // non-traceable author statement /// 0003774 // motor activity // inferred fro
FlyMine data for FBgn0002773.
BDGP gene expression has embryonic in situ data for Mlc2: 14 pix of staining in 3 body parts.
Homophila reports that CG2184 is a close match (2e-15) to human gene CMH10;MYL2 (NP_000423), a gene associated with Cardiomyopathy, familial hypertrophic, 10, 608758 (3);Cardiomyopathy, hypertrophic, mid-left ventricular chamber type, 608758 (3).
BioGrid reports that CG2184 interacts with CG6757 CG7828 CG33484 CG32514 CG5395 CG7417 CG9071 .
TRiP has 3 RNAi stocks for FBgn0002773 available for purchase.
VDRC has 2 RNAi stocks for FBgn0002773 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 13 of 4 0.00Down
Head872 ± 474 of 4 1.10None
Eye65 ± 134 of 4 0.08Down
Thoracicoabdominal ganglion32 ± 34 of 4 0.00Down
Salivary gland8 ± 10 of 4 0.01Down
Crop2693 ± 944 of 4 3.40Up
Midgut213 ± 84 of 4 0.30Down
Tubule22 ± 13 of 4 0.00Down
Hindgut1331 ± 444 of 4 1.70Up
Heart1270 ± 494 of 4 1.58Up
Fat body68 ± 324 of 4 0.09Down
Ovary18 ± 14 of 4 0.00Down
Testis59 ± 44 of 4 0.10Down
Male accessory glands267 ± 144 of 4 0.30Down
Virgin spermatheca42 ± 44 of 4 0.05Down
Mated spermatheca57 ± 34 of 4 0.07Down
Adult carcass2495 ± 2914 of 4 3.10Up
Larval CNS10 ± 31 of 4 0.01Down
Larval Salivary gland7 ± 20 of 4 0.01Down
Larval midgut115 ± 154 of 4 0.14Down
Larval tubule16 ± 21 of 4 0.00Down
Larval hindgut622 ± 914 of 4 0.78None
Larval fat body0 ± 00 of 4 0.00Down
Larval trachea61 ± 324 of 4 0.08Down
Larval carcass2246 ± 2454 of 4 2.80Up
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly802 ± 694 of 4

Looking for CG2184-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime