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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2186-RA through 18771 annotations produced 1 hits



(CG2186):

Annotation Number : CG2186
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030243
Gbrowse : chrX:10751689-10757613 (+) // 100.0 //
Probeset : 1630686_at
Accessions : protein= NP_572660;, nucleotide= NM_132432;
FlyMine data for FBgn0030243.
BDGP gene expression has embryonic in situ data for CG2186: 4 pix of staining in 1 body parts.
BioGrid reports that CG2186 interacts with CG9218 .
TRiP has 1 RNAi stocks for FBgn0030243 available for purchase.
VDRC has 1 RNAi stocks for FBgn0030243 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 ± 24 of 4 0.40Down
Head33 ± 44 of 4 0.30Down
Eye39 ± 24 of 4 0.34Down
Thoracicoabdominal ganglion33 ± 54 of 4 0.30Down
Salivary gland75 ± 54 of 4 0.65Down
Crop67 ± 34 of 4 0.60Down
Midgut64 ± 44 of 4 0.60Down
Tubule71 ± 24 of 4 0.60Down
Hindgut49 ± 34 of 4 0.40Down
Heart56 ± 64 of 4 0.49Down
Fat body59 ± 94 of 4 0.51Down
Ovary412 ± 34 of 4 3.50Up
Testis9 ± 23 of 4 0.10Down
Male accessory glands42 ± 24 of 4 0.40Down
Virgin spermatheca45 ± 24 of 4 0.39Down
Mated spermatheca52 ± 14 of 4 0.45Down
Adult carcass55 ± 44 of 4 0.50Down
Larval CNS116 ± 84 of 4 1.00None
Larval Salivary gland100 ± 84 of 4 0.86None
Larval midgut47 ± 24 of 4 0.41Down
Larval tubule68 ± 94 of 4 0.60Down
Larval hindgut60 ± 24 of 4 0.52Down
Larval fat body46 ± 34 of 4 0.40Down
Larval trachea77 ± 214 of 4 0.67Down
Larval carcass76 ± 44 of 4 0.66Down
S2 cells (growing)141 ± 24 of 4 1.21None
Whole fly116 ± 114 of 4

Looking for CG2186-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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