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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG2194-RB through 18771 annotations produced 1 hits

Drosophila Rhythmically expressed gene 3 (su(r)):

Annotation Number : CG2194
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086450
Gbrowse : chrX:9090838-9096770 (-) // 100.0 //
Probeset : 1625686_s_at
Accessions : protein= NP_572538; /// NP_727320;, nucleotide= NM_132310; /// NM_167182;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004152 // dihydroorotate dehydrogenase activit
FlyMine data for FBgn0086450.
Homophila reports that CG2194 is a close match (0) to human gene DPD;DPYD (NP_000101), a gene associated with Thymine-uraciluria (3);{Fluorouracil toxicity, sensitivity to} (3).
BioGrid reports that CG2194 interacts with CG2381 CG3187 CG6611 CG8778 CG17757 .
VDRC has 2 RNAi stocks for FBgn0086450 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 34 of 4 0.80Down
Head174 94 of 4 2.30Up
Eye65 214 of 4 0.86None
Thoracicoabdominal ganglion97 74 of 4 1.30None
Salivary gland225 124 of 4 3.00Up
Crop169 134 of 4 2.30Up
Midgut268 124 of 4 3.60Up
Tubule819 194 of 410.90Up
Hindgut227 164 of 4 3.00Up
Heart379 244 of 4 5.04Up
Fat body828 1014 of 411.00Up
Ovary3 01 of 4 0.00Down
Testis8 13 of 4 0.10Down
Male accessory glands237 174 of 4 3.20Up
Virgin spermatheca1292 834 of 417.17Up
Mated spermatheca1070 674 of 414.22Up
Adult carcass294 164 of 4 3.90Up
Larval CNS15 24 of 4 0.21Down
Larval Salivary gland11 11 of 4 0.16Down
Larval midgut387 554 of 4 5.15Up
Larval tubule21 24 of 4 0.30Down
Larval hindgut92 104 of 4 1.23None
Larval fat body33 54 of 4 0.40Down
Larval trachea14 44 of 4 0.19Down
Larval carcass27 64 of 4 0.36Down
S2 cells (growing)1109 294 of 414.73Up
Whole fly75 44 of 4

Looking for CG2194-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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