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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2201-RA through 18771 annotations produced 1 hits



(CG2201):

Annotation Number : CG2201
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032955
Gbrowse : chr2L:21614762-21623599 (-) // 100.0 //
Probeset : 1626079_a_at
Accessions : protein= NP_001033931; /// NP_001033932; /// NP_610115; /// NP_724348; /// NP_724349;, nucleotide= NM_001038842; /// NM_001038843; /// NM_136271; /// NM_165386; /// NM_165387;
Interpro : 0004103 // choline kinase activity // inferred from sequence or structural similarity /// 0004103 // choline kinase acti
FlyMine data for FBgn0032955.
TRiP has 1 RNAi stocks for FBgn0032955 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032955 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain228 ± 54 of 4 0.50Down
Head498 ± 134 of 4 1.10None
Eye878 ± 194 of 4 1.90Up
Thoracicoabdominal ganglion213 ± 154 of 4 0.50Down
Salivary gland153 ± 64 of 4 0.33Down
Crop207 ± 64 of 4 0.40Down
Midgut256 ± 74 of 4 0.60Down
Tubule332 ± 44 of 4 0.70Down
Hindgut223 ± 34 of 4 0.50Down
Heart245 ± 94 of 4 0.53Down
Fat body460 ± 644 of 4 0.99None
Ovary713 ± 94 of 4 1.50Up
Testis202 ± 154 of 4 0.40Down
Male accessory glands490 ± 244 of 4 1.10None
Virgin spermatheca229 ± 224 of 4 0.50Down
Mated spermatheca323 ± 124 of 4 0.70Down
Adult carcass469 ± 94 of 4 1.00None
Larval CNS62 ± 144 of 4 0.14Down
Larval Salivary gland64 ± 44 of 4 0.14Down
Larval midgut108 ± 134 of 4 0.23Down
Larval tubule528 ± 354 of 4 1.10None
Larval hindgut216 ± 84 of 4 0.47Down
Larval fat body698 ± 974 of 4 1.50None
Larval trachea129 ± 254 of 4 0.28Down
Larval carcass53 ± 24 of 4 0.11Down
S2 cells (growing)219 ± 24 of 4 0.47Down
Whole fly463 ± 164 of 4

Looking for CG2201-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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