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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2206-RA through 18771 annotations produced 1 hits



lethal (1) G0193 (l(1)G0193):

Annotation Number : CG2206
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027280
Gbrowse : chrX:7835509-7841039 (-) // 100.0 //
Probeset : 1626411_at
Accessions : protein= NP_572427; /// NP_996366;, nucleotide= NM_132199; /// NM_206643;
FlyMine data for FBgn0027280.
VDRC has 3 RNAi stocks for FBgn0027280 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain567 104 of 4 1.90Up
Head503 154 of 4 1.70Up
Eye565 154 of 4 1.87Up
Thoracicoabdominal ganglion609 204 of 4 2.00Up
Salivary gland306 114 of 4 1.02None
Crop551 164 of 4 1.80Up
Midgut208 64 of 4 0.70Down
Tubule413 274 of 4 1.40Up
Hindgut551 24 of 4 1.80Up
Heart615 154 of 4 2.04Up
Fat body457 554 of 4 1.52Up
Ovary410 164 of 4 1.40Up
Testis108 34 of 4 0.40Down
Male accessory glands218 54 of 4 0.70Down
Virgin spermatheca332 144 of 4 1.10None
Mated spermatheca322 154 of 4 1.07None
Adult carcass429 214 of 4 1.40Up
Larval CNS427 194 of 4 1.42Up
Larval Salivary gland101 84 of 4 0.34Down
Larval midgut250 124 of 4 0.83None
Larval tubule800 204 of 4 2.70Up
Larval hindgut291 144 of 4 0.97None
Larval fat body476 434 of 4 1.60Up
Larval trachea429 574 of 4 1.42Up
Larval carcass275 174 of 4 0.91None
S2 cells (growing)1938 454 of 4 6.42Up
Whole fly301 234 of 4

Looking for CG2206-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime