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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2211-RA through 18771 annotations produced 1 hits



(CG2211):

Annotation Number : CG2211
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035211
Gbrowse : chr3L:1333236-1335303 (-) // 100.0 //
Probeset : 1631264_at
Accessions : protein= NP_612102;, nucleotide= NM_138258;
FlyMine data for FBgn0035211.
BDGP gene expression has embryonic in situ data for CG2211: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035211 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 ± 14 of 4 1.00None
Head65 ± 54 of 4 0.80None
Eye131 ± 84 of 4 1.68Up
Thoracicoabdominal ganglion71 ± 14 of 4 0.90None
Salivary gland49 ± 14 of 4 0.64Down
Crop27 ± 14 of 4 0.30Down
Midgut40 ± 54 of 4 0.50Down
Tubule35 ± 24 of 4 0.50Down
Hindgut32 ± 14 of 4 0.40Down
Heart37 ± 44 of 4 0.48Down
Fat body77 ± 44 of 4 0.99None
Ovary128 ± 14 of 4 1.60Up
Testis114 ± 34 of 4 1.50Up
Male accessory glands91 ± 44 of 4 1.20None
Virgin spermatheca79 ± 34 of 4 1.02None
Mated spermatheca52 ± 84 of 4 0.67Down
Adult carcass44 ± 34 of 4 0.60Down
Larval CNS98 ± 84 of 4 1.26Up
Larval Salivary gland79 ± 94 of 4 1.02None
Larval midgut74 ± 94 of 4 0.95None
Larval tubule153 ± 04 of 4 2.00Up
Larval hindgut61 ± 44 of 4 0.79Down
Larval fat body157 ± 124 of 4 2.00Up
Larval trachea55 ± 74 of 4 0.71Down
Larval carcass54 ± 34 of 4 0.70Down
S2 cells (growing)53 ± 14 of 4 0.69Down
Whole fly78 ± 34 of 4

Looking for CG2211-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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