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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2212-RA through 18771 annotations produced 1 hits



swiss cheese (sws):

Annotation Number : CG2212
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003656
Gbrowse : chrX:7850851-7862063 (-) // 100.0 //
Probeset : 1631499_a_at
Accessions : protein= NP_511075; /// NP_727224; /// NP_727225;, nucleotide= NM_078520; /// NM_167140; /// NM_167141;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004622 // lysophospholipase activity // inferred from electronic annotation /// 0004622 // lysophospholipase activity /
FlyMine data for FBgn0003656.
Homophila reports that CG2212 is a close match (4e-58) to human gene NTE;NTEMND;PNPLA6;SPG39 (NP_006693), a gene associated with Spastic paraplegia 39, 612020 (3).
TRiP has 1 RNAi stocks for FBgn0003656 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003656 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain880 ± 214 of 4 2.10Up
Head586 ± 274 of 4 1.40Up
Eye390 ± 224 of 4 0.91None
Thoracicoabdominal ganglion1067 ± 214 of 4 2.50Up
Salivary gland152 ± 44 of 4 0.35Down
Crop231 ± 74 of 4 0.50Down
Midgut236 ± 44 of 4 0.60Down
Tubule244 ± 44 of 4 0.60Down
Hindgut204 ± 54 of 4 0.50Down
Heart712 ± 164 of 4 1.66Up
Fat body1188 ± 1414 of 4 2.77Up
Ovary793 ± 304 of 4 1.80Up
Testis816 ± 274 of 4 1.90Up
Male accessory glands239 ± 104 of 4 0.60Down
Virgin spermatheca728 ± 164 of 4 1.70Up
Mated spermatheca613 ± 224 of 4 1.43Up
Adult carcass721 ± 254 of 4 1.70Up
Larval CNS407 ± 314 of 4 0.95None
Larval Salivary gland107 ± 24 of 4 0.25Down
Larval midgut232 ± 134 of 4 0.54Down
Larval tubule183 ± 64 of 4 0.40Down
Larval hindgut243 ± 104 of 4 0.57Down
Larval fat body271 ± 174 of 4 0.60Down
Larval trachea176 ± 54 of 4 0.41Down
Larval carcass188 ± 94 of 4 0.44Down
S2 cells (growing)237 ± 34 of 4 0.55Down
Whole fly429 ± 104 of 4

Looking for CG2212-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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