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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG2213-RA through 18771 annotations produced 1 hits

CG2213 (msd5):

Annotation Number : CG2213
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035210
Gbrowse : chr3L:1332299-1333152 (-) // 100.0 //
Probeset : 1623468_at
Accessions : protein= NP_612101;, nucleotide= NM_138257;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035210.
BDGP gene expression has embryonic in situ data for CG2213: 4 pix of staining in 1 body parts.
BioGrid reports that CG2213 interacts with CG5890 CG30263 CG31175 CG40127 CG6544 CG9071 .
VDRC has 1 RNAi stocks for FBgn0035210 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 04 of 4 0.30Down
Head18 14 of 4 0.20Down
Eye40 24 of 4 0.36Down
Thoracicoabdominal ganglion39 34 of 4 0.40Down
Salivary gland10 40 of 4 0.10Down
Crop49 14 of 4 0.40Down
Midgut34 34 of 4 0.30Down
Tubule11 21 of 4 0.10Down
Hindgut17 14 of 4 0.20Down
Heart40 24 of 4 0.36Down
Fat body23 24 of 4 0.21Down
Ovary246 64 of 4 2.20Up
Testis103 14 of 4 0.90None
Male accessory glands15 21 of 4 0.10Down
Virgin spermatheca12 13 of 4 0.11Down
Mated spermatheca14 24 of 4 0.13Down
Adult carcass31 34 of 4 0.30Down
Larval CNS273 154 of 4 2.43Up
Larval Salivary gland14 12 of 4 0.12Down
Larval midgut33 24 of 4 0.29Down
Larval tubule18 14 of 4 0.20Down
Larval hindgut38 14 of 4 0.35Down
Larval fat body48 73 of 4 0.40Down
Larval trachea94 24 of 4 0.84Down
Larval carcass57 24 of 4 0.51Down
S2 cells (growing)163 54 of 4 1.46Up
Whole fly112 34 of 4

Looking for CG2213-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime