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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2216-RA through 18771 annotations produced 1 hits



Ferritin (Fer1HCH):

Annotation Number : CG2216
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015222
Gbrowse : chr3R:26211289-26213851 (-) // 100.0 //
Probeset : 1633034_s_at
Accessions : protein= NP_524873; /// NP_733358; /// NP_733359; /// NP_733360; /// NP_733361;, nucleotide= NM_080134; /// NM_170479; /// NM_170480; /// NM_170481; /// NM_170482;
Pathway : 0005794 // Golgi apparatus // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0015222.
BDGP gene expression has embryonic in situ data for Fer1HCH: 26 pix of staining in 14 body parts.
Homophila reports that CG2216 is a close match (3e-19) to human gene FTH1;FTHL6 (NP_002023), a gene associated with Iron overload, autosomal dominant (3).
BioGrid reports that CG2216 interacts with CG2637 CG31453 CG6683 CG32016 CG5466 CG7231 CG7399 CG33320 CG33103 .
VDRC has 3 RNAi stocks for FBgn0015222 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2715 454 of 4 1.00None
Head3110 324 of 4 1.20Up
Eye5036 634 of 4 1.94Up
Thoracicoabdominal ganglion3491 434 of 4 1.30Up
Salivary gland2920 1344 of 4 1.12None
Crop2707 254 of 4 1.00None
Midgut5718 554 of 4 2.20Up
Tubule6279 294 of 4 2.40Up
Hindgut3147 224 of 4 1.20Up
Heart6880 4924 of 4 2.65Up
Fat body4995 5944 of 4 1.92Up
Ovary1679 344 of 4 0.60Down
Testis1326 344 of 4 0.50Down
Male accessory glands2240 684 of 4 0.90None
Virgin spermatheca5512 1814 of 4 2.12Up
Mated spermatheca5546 2424 of 4 2.13Up
Adult carcass5393 1514 of 4 2.10Up
Larval CNS2253 1564 of 4 0.87None
Larval Salivary gland1354 294 of 4 0.52Down
Larval midgut5580 1344 of 4 2.15Up
Larval tubule4310 314 of 4 1.70Up
Larval hindgut2792 1354 of 4 1.07None
Larval fat body4236 5184 of 4 1.60Up
Larval trachea3091 2224 of 4 1.19Up
Larval carcass2416 1874 of 4 0.93None
S2 cells (growing)3674 414 of 4 1.41Up
Whole fly2599 1514 of 4

Looking for CG2216-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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