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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2224-RA through 18771 annotations produced 1 hits



(CG2224):

Annotation Number : CG2224
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039773
Gbrowse : chr3R:26282675-26285110 (-) // 100.0 //
Probeset : 1640960_at
Accessions : protein= NP_651796;, nucleotide= NM_143539;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039773.
BioGrid reports that CG2224 interacts with CG8055 CG9779 CG3944 CG7109 CG8726 CG16757 .
VDRC has 2 RNAi stocks for FBgn0039773 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 34 of 4 1.40None
Head32 14 of 4 0.70None
Eye39 44 of 4 0.88None
Thoracicoabdominal ganglion62 64 of 4 1.40None
Salivary gland46 43 of 4 1.05None
Crop38 34 of 4 0.90None
Midgut51 24 of 4 1.10None
Tubule36 14 of 4 0.80Down
Hindgut37 44 of 4 0.80None
Heart36 24 of 4 0.81None
Fat body35 84 of 4 0.80None
Ovary43 24 of 4 1.00None
Testis225 74 of 4 5.10Up
Male accessory glands23 32 of 4 0.50Down
Virgin spermatheca12 01 of 4 0.28Down
Mated spermatheca10 11 of 4 0.23Down
Adult carcass36 44 of 4 0.80None
Larval CNS29 34 of 4 0.66None
Larval Salivary gland24 24 of 4 0.55Down
Larval midgut32 33 of 4 0.72None
Larval tubule34 14 of 4 0.80None
Larval hindgut51 14 of 4 1.15None
Larval fat body58 243 of 4 1.30None
Larval trachea28 34 of 4 0.64None
Larval carcass40 54 of 4 0.91None
S2 cells (growing)93 34 of 4 2.11Up
Whole fly44 54 of 4

Looking for CG2224-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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