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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2227-RA through 18771 annotations produced 1 hits



GIP-like (Gip):

Annotation Number : CG2227
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011770
Gbrowse : chrX:10222898-10223882 (-) // 100.0 //
Probeset : 1623102_at
Accessions : protein= NP_511106;, nucleotide= NM_078551;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008903 // hydroxypyruvate isomerase activity // in
FlyMine data for FBgn0011770.
BioGrid reports that CG2227 interacts with CG4326 CG8368 CG9949 .
VDRC has 2 RNAi stocks for FBgn0011770 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain97 ± 44 of 4 0.20Down
Head573 ± 334 of 4 1.10None
Eye261 ± 434 of 4 0.50Down
Thoracicoabdominal ganglion74 ± 34 of 4 0.10Down
Salivary gland245 ± 44 of 4 0.47Down
Crop441 ± 84 of 4 0.80None
Midgut1522 ± 324 of 4 2.90Up
Tubule4445 ± 894 of 4 8.50Up
Hindgut404 ± 44 of 4 0.80None
Heart1069 ± 724 of 4 2.04Up
Fat body1637 ± 754 of 4 3.12Up
Ovary490 ± 34 of 4 0.90None
Testis41 ± 33 of 4 0.10Down
Male accessory glands400 ± 294 of 4 0.80None
Virgin spermatheca2535 ± 1234 of 4 4.83Up
Mated spermatheca1714 ± 1074 of 4 3.27Up
Adult carcass722 ± 314 of 4 1.40Up
Larval CNS203 ± 114 of 4 0.39Down
Larval Salivary gland484 ± 234 of 4 0.92None
Larval midgut787 ± 904 of 4 1.50None
Larval tubule3960 ± 404 of 4 7.50Up
Larval hindgut542 ± 114 of 4 1.03None
Larval fat body246 ± 424 of 4 0.50Down
Larval trachea388 ± 224 of 4 0.74None
Larval carcass549 ± 424 of 4 1.05None
S2 cells (growing)186 ± 14 of 4 0.36Down
Whole fly525 ± 454 of 4

Looking for CG2227-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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