FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG2239-RC through 18771 annotations produced 2 hits

jdp (jdp):

Annotation Number : CG2239
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027654
Gbrowse : chr3R:26345110-26352761 (-) // 100.0 //
Probeset : 1629360_at
Accessions : protein= NP_651807; /// NP_733380; /// NP_733381;, nucleotide= NM_143550; /// NM_170501; /// NM_170502;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0031072 // heat shock protein binding // inferred f
FlyMine data for FBgn0027654.
BDGP gene expression has embryonic in situ data for jdp: 18 pix of staining in 3 body parts.
BioGrid reports that CG2239 interacts with CG7399 .
VDRC has 3 RNAi stocks for FBgn0027654 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	16 ± 1	4 of 4	8.00	Up
Head	7 ± 2	0 of 4	3.70	None
Eye	4 ± 1	1 of 4	2.46	None
Thoracicoabdominal ganglion	9 ± 1	2 of 4	4.50	Up
Salivary gland	29 ± 4	2 of 4	14.75	Up
Crop	8 ± 2	0 of 4	4.20	None
Midgut	7 ± 1	0 of 4	3.60	Up
Tubule	10 ± 0	1 of 4	5.20	Up
Hindgut	10 ± 1	0 of 4	5.00	Up
Heart	3 ± 1	0 of 4	1.58	None
Fat body	13 ± 4	1 of 4	6.70	Up
Ovary	3 ± 1	0 of 4	1.60	None
Testis	3 ± 0	0 of 4	1.90	None
Male accessory glands	16 ± 2	4 of 4	8.10	Up
Virgin spermatheca	11 ± 1	2 of 4	5.75	Up
Mated spermatheca	10 ± 2	2 of 4	5.37	Up
Adult carcass	8 ± 2	0 of 4	4.10	None
Larval CNS	7 ± 2	1 of 4	3.46	Up
Larval Salivary gland	10 ± 1	2 of 4	5.22	Up
Larval midgut	7 ± 1	0 of 4	3.79	Up
Larval tubule	10 ± 2	1 of 4	5.00	Up
Larval hindgut	10 ± 0	0 of 4	5.00	Up
Larval fat body	10 ± 1	0 of 4	5.20	Up
Larval trachea	1 ± 0	0 of 4	0.64	None
Larval carcass	9 ± 2	0 of 4	4.54	Up
S2 cells (growing)	9 ± 1	1 of 4	4.69	Up
Whole fly	2 ± 0	0 of 4

jdp (jdp):

Annotation Number : CG2239
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027654
Gbrowse : chr3R:26345110-26352761 (-) // 100.0 //
Probeset : 1623514_a_at
Accessions : protein= NP_651807; /// NP_733380; /// NP_733381;, nucleotide= NM_143550; /// NM_170501; /// NM_170502;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0031072 // heat shock protein binding // inferred f
FlyMine data for FBgn0027654.
BDGP gene expression has embryonic in situ data for jdp: 18 pix of staining in 3 body parts.
BioGrid reports that CG2239 interacts with CG7399 .
VDRC has 3 RNAi stocks for FBgn0027654 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1176 ± 34	4 of 4	24.50	Up
Head	392 ± 53	4 of 4	8.20	Up
Eye	295 ± 6	4 of 4	6.14	Up
Thoracicoabdominal ganglion	522 ± 31	4 of 4	10.90	Up
Salivary gland	22 ± 3	0 of 4	0.47	Down
Crop	65 ± 2	4 of 4	1.40	Up
Midgut	1 ± 0	0 of 4	0.00	Down
Tubule	4 ± 1	0 of 4	0.10	Down
Hindgut	71 ± 4	4 of 4	1.50	Up
Heart	44 ± 2	4 of 4	0.93	None
Fat body	61 ± 12	4 of 4	1.27	None
Ovary	3 ± 1	0 of 4	0.10	Down
Testis	16 ± 1	2 of 4	0.30	Down
Male accessory glands	25 ± 2	0 of 4	0.50	Down
Virgin spermatheca	4 ± 2	0 of 4	0.09	Down
Mated spermatheca	5 ± 1	0 of 4	0.12	Down
Adult carcass	85 ± 5	3 of 4	1.80	Up
Larval CNS	243 ± 36	4 of 4	5.07	Up
Larval Salivary gland	11 ± 2	0 of 4	0.25	Down
Larval midgut	8 ± 2	0 of 4	0.18	Down
Larval tubule	6 ± 1	0 of 4	0.10	Down
Larval hindgut	32 ± 2	3 of 4	0.67	Down
Larval fat body	159 ± 18	4 of 4	3.30	Up
Larval trachea	72 ± 8	4 of 4	1.50	Up
Larval carcass	89 ± 6	4 of 4	1.86	Up
S2 cells (growing)	9 ± 1	0 of 4	0.20	Down
Whole fly	48 ± 3	4 of 4

Looking for CG2239-RC. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720