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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2252-RB through 18771 annotations produced 1 hits



rancor (fs(1)h):

Annotation Number : CG2252
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004656
Gbrowse : chrX:7933975-7950170 (-) // 100.0 //
Probeset : 1625127_at
Accessions : protein= NP_001162699; /// NP_511078; /// NP_727228; /// NP_996368; /// NP_996369; /// NP_996370;, nucleotide= NM_001169228; /// NM_078523; /// NM_167144; /// NM_206645; /// NM_206646; /// NM_206647;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0003677 // DNA binding // non-traceable author statement /// 0004672 // protein kinase activity // non-traceable author
FlyMine data for FBgn0004656.
BDGP gene expression has embryonic in situ data for fs(1)h: 21 pix of staining in 9 body parts.
Homophila reports that CG2252 is a close match (2e-11) to human gene CBP;CREBBP;RSTS (NP_004371), a gene associated with Rubenstein-Taybi syndrome, 180849 (3).
BioGrid reports that CG2252 interacts with CG31156 CG30417 CG6677 CG2189 CG8651 .
TRiP has 3 RNAi stocks for FBgn0004656 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004656 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1002 124 of 4 4.30Up
Head314 194 of 4 1.40Up
Eye600 314 of 4 2.59Up
Thoracicoabdominal ganglion821 124 of 4 3.50Up
Salivary gland443 404 of 4 1.91Up
Crop342 204 of 4 1.50Up
Midgut269 134 of 4 1.20None
Tubule67 24 of 4 0.30Down
Hindgut306 74 of 4 1.30Up
Heart382 44 of 4 1.65Up
Fat body398 144 of 4 1.72Up
Ovary588 94 of 4 2.50Up
Testis39 14 of 4 0.20Down
Male accessory glands385 224 of 4 1.70Up
Virgin spermatheca170 164 of 4 0.73Down
Mated spermatheca238 24 of 4 1.03None
Adult carcass287 234 of 4 1.20None
Larval CNS943 594 of 4 4.07Up
Larval Salivary gland388 224 of 4 1.68Up
Larval midgut250 124 of 4 1.08None
Larval tubule225 144 of 4 1.00None
Larval hindgut315 124 of 4 1.36Up
Larval fat body261 234 of 4 1.10None
Larval trachea754 274 of 4 3.25Up
Larval carcass320 174 of 4 1.38Up
S2 cells (growing)599 194 of 4 2.58Up
Whole fly232 114 of 4

Looking for CG2252-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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