FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG2254-RA through 18771 annotations produced 1 hits

/// (CG2254 /// DsecGM11216):

Annotation Number : CG2254
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029994
Gbrowse : chrX:7972381-7975635 (-) // 100.0 //
Probeset : 1626503_at
Accessions : protein= NP_572436;, nucleotide= NM_132208;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0029994.
BDGP gene expression has embryonic in situ data for CG2254: 21 pix of staining in 4 body parts.
Homophila reports that CG2254 is a close match (1e-12) to human gene HSD11;HSD11B1;HSD11L (NP_861420), a gene associated with Cortisone reductase deficiency, 604931 (3).
TRiP has 1 RNAi stocks for FBgn0029994 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029994 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	197 ± 2	4 of 4	0.40	Down
Head	1898 ± 168	4 of 4	3.40	Up
Eye	2681 ± 90	4 of 4	4.87	Up
Thoracicoabdominal ganglion	96 ± 8	4 of 4	0.20	Down
Salivary gland	24 ± 3	1 of 4	0.04	Down
Crop	388 ± 28	4 of 4	0.70	Down
Midgut	1766 ± 84	4 of 4	3.20	Up
Tubule	203 ± 11	4 of 4	0.40	Down
Hindgut	2331 ± 136	4 of 4	4.20	Up
Heart	1271 ± 38	4 of 4	2.31	Up
Fat body	2331 ± 107	4 of 4	4.23	Up
Ovary	7 ± 1	0 of 4	0.00	Down
Testis	114 ± 3	4 of 4	0.20	Down
Male accessory glands	221 ± 8	4 of 4	0.40	Down
Virgin spermatheca	865 ± 87	4 of 4	1.57	Up
Mated spermatheca	862 ± 65	4 of 4	1.57	Up
Adult carcass	2260 ± 214	4 of 4	4.10	Up
Larval CNS	16 ± 9	4 of 4	0.03	Down
Larval Salivary gland	57 ± 5	4 of 4	0.11	Down
Larval midgut	2531 ± 92	4 of 4	4.59	Up
Larval tubule	53 ± 7	4 of 4	0.10	Down
Larval hindgut	588 ± 28	4 of 4	1.07	None
Larval fat body	197 ± 15	4 of 4	0.40	Down
Larval trachea	64 ± 64	4 of 4	0.12	Down
Larval carcass	40 ± 8	4 of 4	0.07	Down
S2 cells (growing)	3 ± 1	0 of 4	0.01	Down
Whole fly	551 ± 53	4 of 4

Looking for CG2254-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720