FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG2257-RA through 18771 annotations produced 1 hits

Ubc-E2H (Ubc-E2H):

Annotation Number : CG2257
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029996
Gbrowse : chrX:7982034-7988097 (-) // 100.0 //
Probeset : 1629843_s_at
Accessions : protein= NP_572438; /// NP_727233; /// NP_727234;, nucleotide= NM_132210; /// NM_167145; /// NM_167146;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0029996.
Homophila reports that CG2257 is a close match (1e-19) to human gene RAD6A;UBE2A (NP_003327), a gene associated with Mental retardation, X-linked syndromic (3).
BioGrid reports that CG2257 interacts with CG2859 CG31304 CG3217 CG4099 CG7954 CG7987 .
VDRC has 3 RNAi stocks for FBgn0029996 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	523 ± 14	4 of 4	0.80	Down
Head	475 ± 8	4 of 4	0.70	Down
Eye	524 ± 26	4 of 4	0.82	Down
Thoracicoabdominal ganglion	395 ± 13	4 of 4	0.60	Down
Salivary gland	512 ± 43	4 of 4	0.81	None
Crop	479 ± 13	4 of 4	0.80	Down
Midgut	493 ± 13	4 of 4	0.80	Down
Tubule	438 ± 22	4 of 4	0.70	Down
Hindgut	442 ± 11	4 of 4	0.70	Down
Heart	470 ± 24	4 of 4	0.74	Down
Fat body	764 ± 79	4 of 4	1.20	Up
Ovary	1226 ± 19	4 of 4	1.90	Up
Testis	70 ± 2	4 of 4	0.10	Down
Male accessory glands	372 ± 14	4 of 4	0.60	Down
Virgin spermatheca	491 ± 27	4 of 4	0.77	Down
Mated spermatheca	434 ± 18	4 of 4	0.68	Down
Adult carcass	697 ± 21	4 of 4	1.10	None
Larval CNS	258 ± 21	4 of 4	0.41	Down
Larval Salivary gland	230 ± 11	4 of 4	0.36	Down
Larval midgut	528 ± 98	4 of 4	0.83	None
Larval tubule	901 ± 41	4 of 4	1.40	Up
Larval hindgut	381 ± 34	4 of 4	0.60	Down
Larval fat body	784 ± 75	4 of 4	1.20	None
Larval trachea	232 ± 17	4 of 4	0.36	Down
Larval carcass	435 ± 59	4 of 4	0.68	Down
S2 cells (growing)	392 ± 6	4 of 4	0.62	Down
Whole fly	636 ± 22	4 of 4

Looking for CG2257-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720