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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2269-RC through 18771 annotations produced 1 hits



/// (CG2269 /// DmirCG2269):

Annotation Number : CG2269
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033484
Gbrowse : chr2R:5975075-5983921 (+) // 100.0 //
Probeset : 1638260_s_at
Accessions : protein= NP_610553; /// NP_724880; /// NP_724881;, nucleotide= NM_136709; /// NM_165737; /// NM_165738;
FlyMine data for FBgn0033484.
VDRC has 1 RNAi stocks for FBgn0033484 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1942 414 of 425.10Up
Head573 404 of 4 7.40Up
Eye93 54 of 4 1.21Up
Thoracicoabdominal ganglion2214 1154 of 428.60Up
Salivary gland9 30 of 4 0.12Down
Crop4 11 of 4 0.10Down
Midgut4 10 of 4 0.10Down
Tubule2 00 of 4 0.00Down
Hindgut2 10 of 4 0.00Down
Heart10 03 of 4 0.14Down
Fat body13 43 of 4 0.17Down
Ovary0 00 of 4 0.00Down
Testis0 00 of 4 0.00Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca5 00 of 4 0.07Down
Mated spermatheca6 31 of 4 0.08Down
Adult carcass28 24 of 4 0.40Down
Larval CNS990 724 of 412.80Up
Larval Salivary gland1 00 of 4 0.02Down
Larval midgut1 00 of 4 0.01Down
Larval tubule3 10 of 4 0.00Down
Larval hindgut2 10 of 4 0.03Down
Larval fat body1 00 of 4 0.00Down
Larval trachea3 20 of 4 0.05Down
Larval carcass8 10 of 4 0.11Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly77 24 of 4

Looking for CG2269-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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