FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG2275-RB through 18771 annotations produced 1 hits

Jun oncogene (Jra):

Annotation Number : CG2275
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001291
Gbrowse : chr2R:5983984-5986110 (+) // 100.0 //
Probeset : 1635224_s_at
Accessions : protein= NP_476586; /// NP_724882;, nucleotide= NM_057238; /// NM_165739;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : engulfment // inferred from mutant phenotype /// 0007254 // JNK cascade // inferred from genetic interaction /// 000725
FlyMine data for FBgn0001291.
BioGrid reports that CG2275 interacts with CG2275 CG2913 CG4898 CG5694 CG3166 CG5680 CG5680 CG5680 CG5680 CG18361 CG8049 CG10079 CG2248 CG2248 CG9375 CG7873 CG18492 CG1945 CG4353 CG33197 CG16973 CG16973 CG7892 CG12212 CG2845 CG10108 CG17077 CG17077 CG1857 CG12437 CG12559 CG12559 CG18085 CG18085 CG18247 CG2272 CG14026 CG7850 Dmel CG33956 Dmel CG33956 .
TRiP has 1 RNAi stocks for FBgn0001291 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001291 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	145 ± 6	4 of 4	0.90	None
Head	160 ± 5	4 of 4	1.00	None
Eye	161 ± 2	4 of 4	0.97	None
Thoracicoabdominal ganglion	184 ± 0	4 of 4	1.10	None
Salivary gland	173 ± 9	4 of 4	1.05	None
Crop	339 ± 8	4 of 4	2.10	Up
Midgut	230 ± 7	4 of 4	1.40	Up
Tubule	416 ± 81	4 of 4	2.50	Up
Hindgut	255 ± 7	4 of 4	1.50	Up
Heart	147 ± 24	4 of 4	0.89	None
Fat body	94 ± 15	4 of 4	0.57	Down
Ovary	283 ± 2	4 of 4	1.70	Up
Testis	139 ± 3	4 of 4	0.80	None
Male accessory glands	137 ± 5	4 of 4	0.80	None
Virgin spermatheca	133 ± 6	4 of 4	0.81	Down
Mated spermatheca	146 ± 4	4 of 4	0.89	None
Adult carcass	140 ± 4	4 of 4	0.80	None
Larval CNS	118 ± 7	4 of 4	0.71	Down
Larval Salivary gland	228 ± 7	4 of 4	1.38	Up
Larval midgut	250 ± 12	4 of 4	1.52	Up
Larval tubule	357 ± 10	4 of 4	2.20	Up
Larval hindgut	243 ± 10	4 of 4	1.47	Up
Larval fat body	167 ± 4	4 of 4	1.00	None
Larval trachea	293 ± 52	4 of 4	1.77	Up
Larval carcass	231 ± 17	4 of 4	1.40	Up
S2 cells (growing)	389 ± 20	4 of 4	2.35	Up
Whole fly	165 ± 9	4 of 4

Looking for CG2275-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720