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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2286-RA through 18771 annotations produced 1 hits



chrX:8142714-8145699 (-) // 100.0 // (NADH:ubiquinone reductase 75-kD subunit precursor):

Annotation Number : CG2286
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638593_a_at
Accessions : protein= , nucleotide= NP_511083; /// NP_727255;
Pathway : 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from ele
Interpro : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred fro
FlyMine data for full length.
Homophila reports that CG2286 is a close match (0) to human gene NDUFS1 (NP_004997), a gene associated with Mitochondrial complex I deficiency, 252010 (3).
BioGrid reports that CG2286 interacts with CG3085 CG31149 CG3299 CG4276 CG7352 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain752 234 of 4 1.40Up
Head673 274 of 4 1.30Up
Eye794 194 of 4 1.51Up
Thoracicoabdominal ganglion955 184 of 4 1.80Up
Salivary gland936 174 of 4 1.78Up
Crop475 134 of 4 0.90None
Midgut350 64 of 4 0.70Down
Tubule941 234 of 4 1.80Up
Hindgut838 364 of 4 1.60Up
Heart698 254 of 4 1.33Up
Fat body786 544 of 4 1.50Up
Ovary199 64 of 4 0.40Down
Testis224 134 of 4 0.40Down
Male accessory glands339 84 of 4 0.60Down
Virgin spermatheca531 234 of 4 1.01None
Mated spermatheca462 314 of 4 0.88None
Adult carcass1805 664 of 4 3.40Up
Larval CNS296 294 of 4 0.57Down
Larval Salivary gland466 174 of 4 0.89None
Larval midgut527 174 of 4 1.00None
Larval tubule269 284 of 4 0.50Down
Larval hindgut844 424 of 4 1.61Up
Larval fat body177 44 of 4 0.30Down
Larval trachea215 164 of 4 0.41Down
Larval carcass579 534 of 4 1.10None
S2 cells (growing)288 74 of 4 0.55Down
Whole fly525 274 of 4

Looking for CG2286-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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