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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2292-RA through 18771 annotations produced 1 hits



(CG2292):

Annotation Number : CG2292
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033479
Gbrowse : chr2R:5950883-5954060 (-) // 100.0 //
Probeset : 1638995_at
Accessions : protein= NP_610549;, nucleotide= NM_136705;
Pathway : 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred fro
FlyMine data for FBgn0033479.
VDRC has 3 RNAi stocks for FBgn0033479 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 ± 04 of 4 0.80None
Head18 ± 04 of 4 0.60Down
Eye18 ± 14 of 4 0.60Down
Thoracicoabdominal ganglion19 ± 14 of 4 0.60Down
Salivary gland58 ± 44 of 4 1.91Up
Crop23 ± 14 of 4 0.80None
Midgut41 ± 14 of 4 1.30Up
Tubule39 ± 24 of 4 1.30Up
Hindgut31 ± 14 of 4 1.00None
Heart16 ± 24 of 4 0.55Down
Fat body24 ± 24 of 4 0.80None
Ovary38 ± 14 of 4 1.20None
Testis136 ± 54 of 4 4.50Up
Male accessory glands26 ± 14 of 4 0.90None
Virgin spermatheca31 ± 24 of 4 1.03None
Mated spermatheca31 ± 24 of 4 1.03None
Adult carcass15 ± 23 of 4 0.50Down
Larval CNS25 ± 14 of 4 0.82None
Larval Salivary gland90 ± 24 of 4 2.95Up
Larval midgut32 ± 24 of 4 1.05None
Larval tubule63 ± 34 of 4 2.10Up
Larval hindgut38 ± 24 of 4 1.26None
Larval fat body36 ± 74 of 4 1.20None
Larval trachea31 ± 14 of 4 1.04None
Larval carcass20 ± 14 of 4 0.65Down
S2 cells (growing)48 ± 24 of 4 1.57Up
Whole fly30 ± 24 of 4

Looking for CG2292-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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