FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG2304-RA through 18771 annotations produced 1 hits

Trc8 (Trc8):

Annotation Number : CG2304
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039668
Gbrowse : chr3R:25324887-25329519 (-) // 100.0 //
Probeset : 1632303_a_at
Accessions : protein= NP_733292; /// NP_733293; /// NP_996303; /// NP_996304;, nucleotide= NM_170413; /// NM_170414; /// NM_206580; /// NM_206581;
Pathway : 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from ele
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electro
FlyMine data for FBgn0039668.
Homophila reports that CG2304 is a close match (6e-96) to human gene HRCA1;RCA1;RNF139;TRC8 (NP_009149), a gene associated with Renal cell carcinoma, 144700 (3).
BioGrid reports that CG2304 interacts with CG13221 CG14884 .
VDRC has 2 RNAi stocks for FBgn0039668 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	240 ± 4	4 of 4	0.90	Down
Head	156 ± 9	4 of 4	0.60	Down
Eye	173 ± 9	4 of 4	0.64	Down
Thoracicoabdominal ganglion	245 ± 11	4 of 4	0.90	None
Salivary gland	451 ± 19	4 of 4	1.68	Up
Crop	206 ± 6	4 of 4	0.80	Down
Midgut	160 ± 6	4 of 4	0.60	Down
Tubule	131 ± 3	4 of 4	0.50	Down
Hindgut	190 ± 8	4 of 4	0.70	Down
Heart	933 ± 41	4 of 4	3.47	Up
Fat body	1121 ± 170	4 of 4	4.17	Up
Ovary	175 ± 5	4 of 4	0.70	Down
Testis	846 ± 28	4 of 4	3.10	Up
Male accessory glands	499 ± 44	4 of 4	1.90	Up
Virgin spermatheca	106 ± 2	4 of 4	0.40	Down
Mated spermatheca	88 ± 6	4 of 4	0.33	Down
Adult carcass	877 ± 99	4 of 4	3.30	Up
Larval CNS	186 ± 11	4 of 4	0.69	Down
Larval Salivary gland	306 ± 6	4 of 4	1.14	Up
Larval midgut	579 ± 12	4 of 4	2.16	Up
Larval tubule	374 ± 10	4 of 4	1.40	Up
Larval hindgut	303 ± 15	4 of 4	1.13	None
Larval fat body	334 ± 14	4 of 4	1.20	Up
Larval trachea	218 ± 15	4 of 4	0.81	Down
Larval carcass	319 ± 21	4 of 4	1.19	None
S2 cells (growing)	449 ± 11	4 of 4	1.67	Up
Whole fly	269 ± 9	4 of 4

Looking for CG2304-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720