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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2321-RA through 18771 annotations produced 1 hits



(CG2321):

Annotation Number : CG2321
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039663
Gbrowse : chr3R:25312732-25314987 (-) // 100.0 //
Probeset : 1624126_at
Accessions : protein= NP_651692;, nucleotide= NM_143435;
FlyMine data for FBgn0039663.
BDGP gene expression has embryonic in situ data for CG2321: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0039663 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.40Down
Head2 ± 10 of 4 0.40None
Eye1 ± 00 of 4 0.14Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.40Down
Salivary gland4 ± 10 of 4 0.59None
Crop7 ± 20 of 4 1.00None
Midgut1 ± 00 of 4 0.20Down
Tubule2 ± 00 of 4 0.30Down
Hindgut2 ± 10 of 4 0.30Down
Heart1 ± 00 of 4 0.22Down
Fat body2 ± 20 of 4 0.40Down
Ovary13 ± 10 of 4 1.90Up
Testis21 ± 24 of 4 2.90Up
Male accessory glands5 ± 10 of 4 0.70None
Virgin spermatheca4 ± 10 of 4 0.66None
Mated spermatheca3 ± 10 of 4 0.42None
Adult carcass3 ± 10 of 4 0.50None
Larval CNS11 ± 13 of 4 1.60Up
Larval Salivary gland11 ± 10 of 4 1.60None
Larval midgut1 ± 00 of 4 0.16Down
Larval tubule2 ± 00 of 4 0.30Down
Larval hindgut2 ± 10 of 4 0.37Down
Larval fat body9 ± 30 of 4 1.30None
Larval trachea2 ± 00 of 4 0.31Down
Larval carcass3 ± 10 of 4 0.51None
S2 cells (growing)17 ± 04 of 4 2.39Up
Whole fly7 ± 00 of 4

Looking for CG2321-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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