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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2380-RA through 18771 annotations produced 1 hits



Nuclear factor I (NfI):

Annotation Number : CG2380
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042696
Gbrowse : chr4:290814-296993 (-) // 100.0 //
Probeset : 1630840_at
Accessions : protein= NP_995592;, nucleotide= NM_205870;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electr
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
FlyMine data for FBgn0042696.
TRiP has 1 RNAi stocks for FBgn0042696 available for purchase.
VDRC has 2 RNAi stocks for FBgn0042696 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain119 84 of 4 5.70Up
Head34 74 of 4 1.60None
Eye12 14 of 4 0.59None
Thoracicoabdominal ganglion45 114 of 4 2.20None
Salivary gland5 10 of 4 0.27Down
Crop33 54 of 4 1.60None
Midgut1 00 of 4 0.10Down
Tubule2 00 of 4 0.10Down
Hindgut14 24 of 4 0.70None
Heart12 14 of 4 0.59None
Fat body7 00 of 4 0.37None
Ovary0 00 of 4 0.00Down
Testis0 00 of 4 0.00Down
Male accessory glands4 01 of 4 0.20Down
Virgin spermatheca5 00 of 4 0.26Down
Mated spermatheca6 01 of 4 0.30Down
Adult carcass68 64 of 4 3.30Up
Larval CNS15 34 of 4 0.76None
Larval Salivary gland4 11 of 4 0.23Down
Larval midgut2 00 of 4 0.13Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut6 04 of 4 0.32None
Larval fat body3 11 of 4 0.20Down
Larval trachea3 10 of 4 0.15Down
Larval carcass23 14 of 4 1.12None
S2 cells (growing)2 00 of 4 0.11Down
Whole fly20 44 of 4

Looking for CG2380-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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