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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2446-RB through 18771 annotations produced 1 hits



Amun (Amun):

Annotation Number : CG2446
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030328
Gbrowse : chrX:11604893-11609063 (-) // 100.0 //
Probeset : 1630636_s_at
Accessions : protein= NP_572741; /// NP_727551; /// NP_727552; /// NP_727553; /// NP_727554;, nucleotide= NM_132513; /// NM_167298; /// NM_167299; /// NM_167300; /// NM_167301;
Pathway : 0005634 // nucleus // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030328.
BioGrid reports that CG2446 interacts with CG3838 CG5460 CG5460 CG3936 CG3936 .
VDRC has 2 RNAi stocks for FBgn0030328 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain346 174 of 4 1.50Up
Head163 34 of 4 0.70Down
Eye393 44 of 4 1.65Up
Thoracicoabdominal ganglion383 194 of 4 1.60Up
Salivary gland189 244 of 4 0.80None
Crop191 124 of 4 0.80Down
Midgut89 54 of 4 0.40Down
Tubule158 84 of 4 0.70Down
Hindgut130 44 of 4 0.50Down
Heart247 94 of 4 1.04None
Fat body134 234 of 4 0.56Down
Ovary508 274 of 4 2.10Up
Testis99 94 of 4 0.40Down
Male accessory glands209 34 of 4 0.90None
Virgin spermatheca144 104 of 4 0.61Down
Mated spermatheca157 84 of 4 0.66Down
Adult carcass158 124 of 4 0.70Down
Larval CNS639 814 of 4 2.69Up
Larval Salivary gland290 114 of 4 1.22Up
Larval midgut160 44 of 4 0.67Down
Larval tubule164 64 of 4 0.70Down
Larval hindgut209 84 of 4 0.88None
Larval fat body146 94 of 4 0.60Down
Larval trachea671 244 of 4 2.82Up
Larval carcass174 44 of 4 0.73Down
S2 cells (growing)416 154 of 4 1.75Up
Whole fly238 104 of 4

Looking for CG2446-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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