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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2469-RB through 18771 annotations produced 1 hits



(CG2469):

Annotation Number : CG2469
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035205
Gbrowse : chr3L:1307223-1311812 (+) // 100.0 //
Probeset : 1626933_s_at
Accessions : protein= NP_788448; /// NP_788449;, nucleotide= NM_176270; /// NM_176271;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0035205.
BDGP gene expression has embryonic in situ data for CG2469: 13 pix of staining in 25 body parts.
BioGrid reports that CG2469 interacts with CG3962 .
TRiP has 1 RNAi stocks for FBgn0035205 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035205 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain979 ± 244 of 4 3.60Up
Head410 ± 134 of 4 1.50Up
Eye713 ± 434 of 4 2.59Up
Thoracicoabdominal ganglion1063 ± 334 of 4 3.90Up
Salivary gland330 ± 104 of 4 1.20Up
Crop289 ± 104 of 4 1.10None
Midgut218 ± 104 of 4 0.80Down
Tubule425 ± 74 of 4 1.50Up
Hindgut293 ± 14 of 4 1.10None
Heart249 ± 124 of 4 0.91None
Fat body154 ± 164 of 4 0.56Down
Ovary367 ± 34 of 4 1.30Up
Testis244 ± 34 of 4 0.90Down
Male accessory glands462 ± 184 of 4 1.70Up
Virgin spermatheca287 ± 134 of 4 1.05None
Mated spermatheca283 ± 124 of 4 1.03None
Adult carcass317 ± 94 of 4 1.20Up
Larval CNS578 ± 214 of 4 2.10Up
Larval Salivary gland440 ± 184 of 4 1.60Up
Larval midgut250 ± 64 of 4 0.91None
Larval tubule334 ± 94 of 4 1.20Up
Larval hindgut270 ± 54 of 4 0.98None
Larval fat body140 ± 84 of 4 0.50Down
Larval trachea270 ± 234 of 4 0.98None
Larval carcass417 ± 104 of 4 1.52Up
S2 cells (growing)239 ± 74 of 4 0.87Down
Whole fly274 ± 84 of 4

Looking for CG2469-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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