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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2503-RA through 18771 annotations produced 1 hits



antimeros (atms):

Annotation Number : CG2503
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010750
Gbrowse : chr3R:601322-603213 (+) // 100.0 //
Probeset : 1634647_at
Accessions : protein= NP_649493;, nucleotide= NM_141236;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0019894 // kinesin binding // inferred from direct
FlyMine data for FBgn0010750.
VDRC has 2 RNAi stocks for FBgn0010750 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 ± 24 of 4 1.30Up
Head57 ± 44 of 4 0.60Down
Eye50 ± 34 of 4 0.54Down
Thoracicoabdominal ganglion88 ± 54 of 4 0.90None
Salivary gland52 ± 63 of 4 0.56Down
Crop62 ± 34 of 4 0.70Down
Midgut31 ± 34 of 4 0.30Down
Tubule58 ± 24 of 4 0.60Down
Hindgut75 ± 24 of 4 0.80None
Heart41 ± 34 of 4 0.45Down
Fat body29 ± 53 of 4 0.31Down
Ovary138 ± 54 of 4 1.50Up
Testis73 ± 74 of 4 0.80None
Male accessory glands75 ± 44 of 4 0.80None
Virgin spermatheca37 ± 14 of 4 0.40Down
Mated spermatheca34 ± 34 of 4 0.37Down
Adult carcass35 ± 44 of 4 0.40Down
Larval CNS153 ± 94 of 4 1.64Up
Larval Salivary gland121 ± 94 of 4 1.29None
Larval midgut34 ± 23 of 4 0.37Down
Larval tubule43 ± 14 of 4 0.50Down
Larval hindgut90 ± 44 of 4 0.97None
Larval fat body45 ± 34 of 4 0.50Down
Larval trachea95 ± 144 of 4 1.01None
Larval carcass44 ± 14 of 4 0.47Down
S2 cells (growing)115 ± 54 of 4 1.23Up
Whole fly94 ± 64 of 4

Looking for CG2503-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime