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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2507-RB through 18771 annotations produced 1 hits



responsible for dominant phenotype (sas):

Annotation Number : CG2507
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002306
Gbrowse : chr3R:2988550-3009424 (+) // 100.0 //
Probeset : 1637412_a_at
Accessions : protein= NP_476611; /// NP_731141;, nucleotide= NM_057263; /// NM_169177;
Pathway : 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electr
Interpro : 0004872 // receptor activity // non-traceable author statement /// 0004872 // receptor activity // inferred from electro
FlyMine data for FBgn0002306.
BioGrid reports that CG2507 interacts with CG5357 .
VDRC has 4 RNAi stocks for FBgn0002306 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head93 ± 44 of 4 3.00Up
Eye82 ± 54 of 4 2.67Up
Thoracicoabdominal ganglion4 ± 20 of 4 0.10Down
Salivary gland20 ± 62 of 4 0.67None
Crop225 ± 84 of 4 7.30Up
Midgut12 ± 12 of 4 0.40Down
Tubule7 ± 00 of 4 0.20Down
Hindgut153 ± 84 of 4 5.00Up
Heart10 ± 24 of 4 0.34Down
Fat body13 ± 53 of 4 0.43Down
Ovary2 ± 00 of 4 0.10Down
Testis44 ± 24 of 4 1.40Up
Male accessory glands100 ± 74 of 4 3.20Up
Virgin spermatheca71 ± 24 of 4 2.30Up
Mated spermatheca77 ± 114 of 4 2.49Up
Adult carcass69 ± 44 of 4 2.20Up
Larval CNS38 ± 34 of 4 1.25None
Larval Salivary gland23 ± 14 of 4 0.76None
Larval midgut12 ± 12 of 4 0.40Down
Larval tubule6 ± 10 of 4 0.20Down
Larval hindgut415 ± 144 of 413.41Up
Larval fat body9 ± 31 of 4 0.30Down
Larval trachea1000 ± 1544 of 432.31Up
Larval carcass480 ± 494 of 415.51Up
S2 cells (growing)2 ± 00 of 4 0.08Down
Whole fly31 ± 24 of 4

Looking for CG2507-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime