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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2512-RA through 18771 annotations produced 1 hits



alpha-Tubulin (alphaTub84D):

Annotation Number : CG2512
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003885
Gbrowse : chr3R:3356376-3358873 (+) // 100.0 //
Probeset : 1633624_s_at
Accessions : protein= NP_524264; /// NP_731169;, nucleotide= NM_079540; /// NM_169189;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotatio
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0003885.
Homophila reports that CG2512 is a close match (0) to human gene LIS3;TUBA1A;TUBA3 (NP_006000), a gene associated with Lissencephaly 3, 611603 (3).
BioGrid reports that CG2512 interacts with CG6020 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 ± 54 of 4 8.40Up
Head17 ± 14 of 4 1.70Up
Eye26 ± 54 of 4 2.73None
Thoracicoabdominal ganglion34 ± 54 of 4 3.50Up
Salivary gland30 ± 23 of 4 3.13Up
Crop20 ± 34 of 4 2.10None
Midgut14 ± 33 of 4 1.50None
Tubule10 ± 03 of 4 1.10None
Hindgut13 ± 13 of 4 1.40Up
Heart14 ± 24 of 4 1.48None
Fat body31 ± 114 of 4 3.18Up
Ovary6 ± 14 of 4 0.70None
Testis4 ± 03 of 4 0.50Down
Male accessory glands20 ± 34 of 4 2.10Up
Virgin spermatheca19 ± 24 of 4 1.96Up
Mated spermatheca25 ± 54 of 4 2.62Up
Adult carcass15 ± 12 of 4 1.60Up
Larval CNS30 ± 74 of 4 3.12Up
Larval Salivary gland11 ± 14 of 4 1.17None
Larval midgut12 ± 12 of 4 1.25None
Larval tubule10 ± 24 of 4 1.00None
Larval hindgut10 ± 23 of 4 1.04None
Larval fat body19 ± 14 of 4 2.00Up
Larval trachea36 ± 44 of 4 3.72Up
Larval carcass8 ± 04 of 4 0.89None
S2 cells (growing)5 ± 04 of 4 0.56Down
Whole fly9 ± 14 of 4

Looking for CG2512-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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