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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2519-RA through 18771 annotations produced 1 hits



(CG2519):

Annotation Number : CG2519
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037336
Gbrowse : chr3R:1365224-1373490 (-) // 100.0 //
Probeset : 1633681_at
Accessions : protein= NP_649546; /// NP_996153;, nucleotide= NM_141289; /// NM_206431;
FlyMine data for FBgn0037336.
VDRC has 2 RNAi stocks for FBgn0037336 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain649 104 of 4 4.20Up
Head331 234 of 4 2.20Up
Eye503 194 of 4 3.29Up
Thoracicoabdominal ganglion781 144 of 4 5.10Up
Salivary gland233 94 of 4 1.52Up
Crop304 144 of 4 2.00Up
Midgut137 84 of 4 0.90None
Tubule123 134 of 4 0.80Down
Hindgut225 34 of 4 1.50Up
Heart183 94 of 4 1.20Up
Fat body158 154 of 4 1.03None
Ovary204 104 of 4 1.30Up
Testis54 44 of 4 0.40Down
Male accessory glands211 94 of 4 1.40Up
Virgin spermatheca219 164 of 4 1.43Up
Mated spermatheca249 204 of 4 1.63Up
Adult carcass170 144 of 4 1.10None
Larval CNS791 224 of 4 5.17Up
Larval Salivary gland209 164 of 4 1.37Up
Larval midgut115 124 of 4 0.76Down
Larval tubule174 34 of 4 1.10Up
Larval hindgut285 24 of 4 1.87Up
Larval fat body167 74 of 4 1.10None
Larval trachea499 274 of 4 3.26Up
Larval carcass243 94 of 4 1.59Up
S2 cells (growing)167 54 of 4 1.10None
Whole fly153 74 of 4

Looking for CG2519-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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