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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2525-RA through 18771 annotations produced 1 hits



Hus1-like (Hus1-like):

Annotation Number : CG2525
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026417
Gbrowse : chr3R:634083-637783 (-) // 100.0 //
Probeset : 1627856_at
Accessions : protein= NP_477426;, nucleotide= NM_058078;
FlyMine data for FBgn0026417.
BDGP gene expression has embryonic in situ data for Hus1-like: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0026417 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 13 of 4 0.30Down
Head20 ± 14 of 4 0.50Down
Eye19 ± 14 of 4 0.45Down
Thoracicoabdominal ganglion18 ± 23 of 4 0.40Down
Salivary gland70 ± 44 of 4 1.63Up
Crop40 ± 14 of 4 0.90None
Midgut41 ± 24 of 4 0.90None
Tubule43 ± 34 of 4 1.00None
Hindgut43 ± 24 of 4 1.00None
Heart30 ± 34 of 4 0.70Down
Fat body30 ± 24 of 4 0.70Down
Ovary67 ± 34 of 4 1.60Up
Testis11 ± 24 of 4 0.30Down
Male accessory glands44 ± 24 of 4 1.00None
Virgin spermatheca30 ± 14 of 4 0.70Down
Mated spermatheca28 ± 44 of 4 0.66None
Adult carcass32 ± 62 of 4 0.70None
Larval CNS70 ± 54 of 4 1.63Up
Larval Salivary gland43 ± 44 of 4 1.01None
Larval midgut41 ± 44 of 4 0.94None
Larval tubule64 ± 24 of 4 1.50Up
Larval hindgut33 ± 24 of 4 0.76Down
Larval fat body37 ± 34 of 4 0.90None
Larval trachea35 ± 54 of 4 0.83None
Larval carcass33 ± 34 of 4 0.77None
S2 cells (growing)102 ± 54 of 4 2.36Up
Whole fly43 ± 34 of 4

Looking for CG2525-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime