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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2528-RA through 18771 annotations produced 1 hits



(CG2528):

Annotation Number : CG2528
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032969
Gbrowse : chr2L:21990830-21992933 (-) // 100.0 //
Probeset : 1629858_at
Accessions : protein= NP_610129;, nucleotide= NM_136285;
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase acti
FlyMine data for FBgn0032969.
VDRC has 3 RNAi stocks for FBgn0032969 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10Down
Head7 00 of 4 0.10Down
Eye1 00 of 4 0.02Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland2 00 of 4 0.05Down
Crop3 10 of 4 0.10Down
Midgut2 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut4 10 of 4 0.10Down
Heart4 21 of 4 0.08Down
Fat body4 30 of 4 0.08Down
Ovary1 00 of 4 0.00Down
Testis726 224 of 414.40Up
Male accessory glands7 30 of 4 0.10Down
Virgin spermatheca4 10 of 4 0.08Down
Mated spermatheca6 10 of 4 0.12Down
Adult carcass7 20 of 4 0.10Down
Larval CNS3 10 of 4 0.06Down
Larval Salivary gland1 00 of 4 0.04Down
Larval midgut2 00 of 4 0.04Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut3 00 of 4 0.07Down
Larval fat body67 413 of 4 1.30None
Larval trachea2 30 of 4 0.05Down
Larval carcass2 00 of 4 0.05Down
S2 cells (growing)1 00 of 4 0.04Down
Whole fly50 24 of 4

Looking for CG2528-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime