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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2540-RA through 18771 annotations produced 1 hits



(CG2540):

Annotation Number : CG2540
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030411
Gbrowse : chrX:12523942-12525152 (+) // 100.0 //
Probeset : 1640452_at
Accessions : protein= NP_572818;, nucleotide= NM_132590;
FlyMine data for FBgn0030411.
BioGrid reports that CG2540 interacts with CG5005 CG6046 CG9184 CG9291 CG9415 CG9834 Dmel CG33715 .
VDRC has 2 RNAi stocks for FBgn0030411 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 14 of 4 1.20None
Head59 24 of 4 0.90None
Eye100 54 of 4 1.55Up
Thoracicoabdominal ganglion70 34 of 4 1.10None
Salivary gland110 84 of 4 1.70Up
Crop49 14 of 4 0.80Down
Midgut109 24 of 4 1.70Up
Tubule102 64 of 4 1.60Up
Hindgut88 54 of 4 1.40Up
Heart48 44 of 4 0.75Down
Fat body41 24 of 4 0.64Down
Ovary112 94 of 4 1.70Up
Testis17 14 of 4 0.30Down
Male accessory glands65 34 of 4 1.00None
Virgin spermatheca50 14 of 4 0.78Down
Mated spermatheca53 24 of 4 0.82None
Adult carcass39 34 of 4 0.60Down
Larval CNS50 64 of 4 0.77Down
Larval Salivary gland39 44 of 4 0.60Down
Larval midgut110 164 of 4 1.70None
Larval tubule40 44 of 4 0.60Down
Larval hindgut32 24 of 4 0.50Down
Larval fat body24 34 of 4 0.40Down
Larval trachea35 34 of 4 0.55Down
Larval carcass24 24 of 4 0.38Down
S2 cells (growing)50 04 of 4 0.77Down
Whole fly65 44 of 4

Looking for CG2540-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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