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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2560-RA through 18771 annotations produced 1 hits



CG2560 (Cpr11A):

Annotation Number : CG2560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030394
Gbrowse : chrX:12381005-12383484 (+) // 100.0 //
Probeset : 1638768_at
Accessions : protein= NP_572803;, nucleotide= NM_132575;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0030394.
BDGP gene expression has embryonic in situ data for CG2560: 16 pix of staining in 3 body parts.
BioGrid reports that CG2560 interacts with CG5094 CG5203 CG7023 CG7158 CG9036 CG5433 CG8368 CG8981 .
VDRC has 2 RNAi stocks for FBgn0030394 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 0.80None
Head4 ± 11 of 4 0.60None
Eye2 ± 10 of 4 0.36None
Thoracicoabdominal ganglion3 ± 10 of 4 0.40None
Salivary gland13 ± 51 of 4 1.68None
Crop6 ± 10 of 4 0.80None
Midgut2 ± 00 of 4 0.30None
Tubule6 ± 00 of 4 0.80Down
Hindgut5 ± 10 of 4 0.70None
Heart3 ± 01 of 4 0.44None
Fat body11 ± 52 of 4 1.39None
Ovary1 ± 00 of 4 0.20None
Testis1 ± 00 of 4 0.20None
Male accessory glands5 ± 10 of 4 0.70None
Virgin spermatheca13 ± 24 of 4 1.61None
Mated spermatheca12 ± 21 of 4 1.50None
Adult carcass6 ± 10 of 4 0.80None
Larval CNS6 ± 20 of 4 0.80None
Larval Salivary gland5 ± 00 of 4 0.69None
Larval midgut17 ± 23 of 4 2.14Up
Larval tubule4 ± 10 of 4 0.50None
Larval hindgut134 ± 194 of 416.46Up
Larval fat body19 ± 33 of 4 2.40Up
Larval trachea127 ± 144 of 415.63Up
Larval carcass1563 ± 3054 of 4191.79Up
S2 cells (growing)4 ± 11 of 4 0.60None
Whole fly8 ± 22 of 4

Looking for CG2560-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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