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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG2574-RA through 18771 annotations produced 1 hits


(CG2574):

Annotation Number : CG2574
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030386
Gbrowse : chrX:12302921-12303864 (+) // 100.0 //
Probeset : 1633168_at
Accessions : protein= NP_572796;, nucleotide= NM_132568;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0016874 // ligase ac
FlyMine data for FBgn0030386.
Homophila reports that CG2574 is a close match (4e-23) to human gene RAD6A;UBE2A (NP_003327), a gene associated with Mental retardation, X-linked syndromic (3).
VDRC has 2 RNAi stocks for FBgn0030386 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.10Down
Head10 ± 10 of 4 0.10Down
Eye4 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.10Down
Salivary gland16 ± 40 of 4 0.17Down
Crop9 ± 10 of 4 0.10Down
Midgut9 ± 20 of 4 0.10Down
Tubule12 ± 11 of 4 0.10Down
Hindgut9 ± 21 of 4 0.10Down
Heart9 ± 20 of 4 0.10Down
Fat body16 ± 21 of 4 0.18Down
Ovary3 ± 10 of 4 0.00Down
Testis745 ± 144 of 4 8.10Up
Male accessory glands6 ± 10 of 4 0.10Down
Virgin spermatheca8 ± 20 of 4 0.10Down
Mated spermatheca14 ± 20 of 4 0.16Down
Adult carcass8 ± 20 of 4 0.10Down
Larval CNS6 ± 10 of 4 0.07Down
Larval Salivary gland8 ± 20 of 4 0.10Down
Larval midgut9 ± 20 of 4 0.11Down
Larval tubule10 ± 00 of 4 0.10Down
Larval hindgut5 ± 00 of 4 0.06Down
Larval fat body88 ± 304 of 4 1.00None
Larval trachea7 ± 50 of 4 0.08Down
Larval carcass12 ± 10 of 4 0.14Down
S2 cells (growing)6 ± 10 of 4 0.07Down
Whole fly91 ± 64 of 4

Looking for CG2574-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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