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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2616-RA through 18771 annotations produced 1 hits



(CG2616):

Annotation Number : CG2616
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037512
Gbrowse : chr3R:3548138-3550140 (+) // 100.0 //
Probeset : 1633398_at
Accessions : protein= NP_649731;, nucleotide= NM_141474;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005740 // mitochondrial envelope // inf
Interpro : 0005488 // binding // inferred from electronic annotation /// 0022857 // transmembrane transporter activity // inferred
FlyMine data for FBgn0037512.
Homophila reports that CG2616 is a close match (6e-11) to human gene UCP3 (NP_003347), a gene associated with {Obesity, severe, and type II diabetes}, 601665 (3).
VDRC has 2 RNAi stocks for FBgn0037512 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head4 20 of 4 0.20Down
Eye2 10 of 4 0.11Down
Thoracicoabdominal ganglion2 10 of 4 0.10Down
Salivary gland5 20 of 4 0.24Down
Crop3 10 of 4 0.20Down
Midgut14 31 of 4 0.60None
Tubule2 00 of 4 0.10Down
Hindgut1 00 of 4 0.10Down
Heart1 00 of 4 0.05Down
Fat body3 20 of 4 0.15Down
Ovary2 00 of 4 0.10Down
Testis285 44 of 411.80Up
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.16Down
Mated spermatheca4 10 of 4 0.20Down
Adult carcass4 20 of 4 0.20Down
Larval CNS2 10 of 4 0.10Down
Larval Salivary gland3 10 of 4 0.14Down
Larval midgut13 23 of 4 0.55Down
Larval tubule3 00 of 4 0.10Down
Larval hindgut2 00 of 4 0.11Down
Larval fat body38 143 of 4 1.60None
Larval trachea4 20 of 4 0.17Down
Larval carcass3 10 of 4 0.14Down
S2 cells (growing)3 10 of 4 0.15Down
Whole fly24 24 of 4

Looking for CG2616-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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