Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
About & FAQ
Top 50
Original data
Interesting meta-analysis

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG2647-RA through 18771 annotations produced 1 hits

chrX:2579612-2586813 (+) // 100.0 // (period):

Annotation Number : CG2647
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638452_at
Accessions : protein= , nucleotide= NP_525056;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0
Interpro : DNA-dependent // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutan
FlyMine data for full length.
Homophila reports that CG2647 is a close match (5e-21) to human gene FASPS;KIAA0347;PER2 (NP_073728), a gene associated with Advanced sleep phase syndrome, familial, 604348 (3).
BioGrid reports that CG2647 interacts with CG2048 CG2048 CG6721 CG2647 CG3234 CG3234 CG3234 CG3234 CG3234 CG3234 CG3234 CG3234 CG3234 CG3234 CG2048 CG3412 EG8914 EG8914 CG3234 .

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 44 of 4 2.90Up
Head159 44 of 4 4.10Up
Eye184 574 of 4 4.72None
Thoracicoabdominal ganglion110 64 of 4 2.80Up
Salivary gland69 74 of 4 1.78Up
Crop44 54 of 4 1.10None
Midgut38 24 of 4 1.00None
Tubule71 143 of 4 1.80Up
Hindgut48 54 of 4 1.20None
Heart29 14 of 4 0.76Down
Fat body38 74 of 4 0.98None
Ovary20 24 of 4 0.50Down
Testis11 02 of 4 0.30Down
Male accessory glands26 31 of 4 0.70Down
Virgin spermatheca30 04 of 4 0.79None
Mated spermatheca27 13 of 4 0.71Down
Adult carcass54 54 of 4 1.40None
Larval CNS30 24 of 4 0.79Down
Larval Salivary gland12 11 of 4 0.33Down
Larval midgut19 10 of 4 0.50Down
Larval tubule7 10 of 4 0.20Down
Larval hindgut3 10 of 4 0.10Down
Larval fat body18 30 of 4 0.50Down
Larval trachea19 84 of 4 0.49Down
Larval carcass7 20 of 4 0.18Down
S2 cells (growing)23 04 of 4 0.59Down
Whole fly39 24 of 4

Looking for CG2647-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime