FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG2655-RA through 18771 annotations produced 1 hits

Helix loop helix protein 3B (HLH3B):

Annotation Number : CG2655
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011276
Gbrowse : chrX:2574306-2575756 (-) // 100.0 //
Probeset : 1638386_at
Accessions : protein= NP_525055;, nucleotide= NM_080316;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0011276.
BioGrid reports that CG2655 interacts with CG5562 CG5102 CG3018 CG4496 CG1106 CG6549 CG1957 .
TRiP has 2 RNAi stocks for FBgn0011276 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011276 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	16 ± 1	3 of 4	2.70	Up
Head	10 ± 2	0 of 4	1.60	None
Eye	4 ± 2	0 of 4	0.73	None
Thoracicoabdominal ganglion	24 ± 3	2 of 4	4.00	Up
Salivary gland	13 ± 6	0 of 4	2.13	None
Crop	6 ± 1	0 of 4	1.00	None
Midgut	4 ± 1	0 of 4	0.70	None
Tubule	4 ± 1	0 of 4	0.70	None
Hindgut	2 ± 0	0 of 4	0.40	None
Heart	3 ± 1	0 of 4	0.49	None
Fat body	6 ± 3	0 of 4	1.04	None
Ovary	0 ± 0	0 of 4	0.10	Down
Testis	3 ± 0	0 of 4	0.50	None
Male accessory glands	2 ± 0	0 of 4	0.40	None
Virgin spermatheca	9 ± 3	0 of 4	1.56	None
Mated spermatheca	8 ± 2	0 of 4	1.42	None
Adult carcass	8 ± 2	0 of 4	1.40	None
Larval CNS	30 ± 4	4 of 4	4.93	Up
Larval Salivary gland	4 ± 1	0 of 4	0.76	None
Larval midgut	15 ± 2	0 of 4	2.54	Up
Larval tubule	3 ± 0	0 of 4	0.50	None
Larval hindgut	2 ± 0	0 of 4	0.34	None
Larval fat body	13 ± 3	0 of 4	2.10	None
Larval trachea	4 ± 2	0 of 4	0.67	None
Larval carcass	2 ± 0	0 of 4	0.38	None
S2 cells (growing)	2 ± 1	0 of 4	0.42	None
Whole fly	6 ± 1	0 of 4

Looking for CG2655-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720