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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2656-RA through 18771 annotations produced 1 hits



(CG2656):

Annotation Number : CG2656
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037478
Gbrowse : chr3R:2970464-2977001 (+) // 100.0 //
Probeset : 1625466_at
Accessions : protein= NP_649699;, nucleotide= NM_141442;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0017076 // purine nucleotide binding // inferre
FlyMine data for FBgn0037478.
BDGP gene expression has embryonic in situ data for CG2656: 15 pix of staining in 12 body parts.
BioGrid reports that CG2656 interacts with CG31482 .
TRiP has 1 RNAi stocks for FBgn0037478 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037478 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain113 34 of 4 0.80None
Head106 54 of 4 0.80Down
Eye154 34 of 4 1.13None
Thoracicoabdominal ganglion126 54 of 4 0.90None
Salivary gland106 104 of 4 0.78None
Crop192 24 of 4 1.40Up
Midgut99 24 of 4 0.70Down
Tubule85 54 of 4 0.60Down
Hindgut107 44 of 4 0.80Down
Heart139 34 of 4 1.02None
Fat body104 44 of 4 0.76Down
Ovary203 24 of 4 1.50Up
Testis124 44 of 4 0.90None
Male accessory glands217 34 of 4 1.60Up
Virgin spermatheca104 54 of 4 0.76Down
Mated spermatheca141 54 of 4 1.03None
Adult carcass125 64 of 4 0.90None
Larval CNS181 184 of 4 1.33Up
Larval Salivary gland102 34 of 4 0.75Down
Larval midgut67 64 of 4 0.49Down
Larval tubule85 14 of 4 0.60Down
Larval hindgut86 14 of 4 0.63Down
Larval fat body69 44 of 4 0.50Down
Larval trachea127 44 of 4 0.94None
Larval carcass82 34 of 4 0.60Down
S2 cells (growing)174 14 of 4 1.28Up
Whole fly136 84 of 4

Looking for CG2656-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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