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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2658-RA through 18771 annotations produced 1 hits



paraplegin_DROME (CG2658):

Annotation Number : CG2658
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024992
Gbrowse : chrX:2588755-2592248 (-) // 100.0 //
Probeset : 1626460_at
Accessions : protein= NP_570017; /// NP_996339;, nucleotide= NM_130661; /// NM_206616;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from ele
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // in
FlyMine data for FBgn0024992.
Homophila reports that CG2658 is a close match (6e-12) to human gene BCS1L;BJS;FLNMS;GRACILE;PTD (NP_004319), a gene associated with Bjornstad syndrome, 262000 (3);GRACILE syndrome, 603358 (3);Leigh syndrome, 256000 (3);Mitochondrial complex III deficiency, 124000 (3).
BioGrid reports that CG2658 interacts with CG8857 .
TRiP has 2 RNAi stocks for FBgn0024992 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain208 ± 54 of 4 0.90None
Head144 ± 44 of 4 0.60Down
Eye118 ± 74 of 4 0.53Down
Thoracicoabdominal ganglion223 ± 104 of 4 1.00None
Salivary gland272 ± 114 of 4 1.21Up
Crop188 ± 64 of 4 0.80None
Midgut196 ± 54 of 4 0.90None
Tubule280 ± 224 of 4 1.20Up
Hindgut295 ± 34 of 4 1.30Up
Heart135 ± 54 of 4 0.60Down
Fat body134 ± 104 of 4 0.60Down
Ovary405 ± 104 of 4 1.80Up
Testis310 ± 94 of 4 1.40Up
Male accessory glands144 ± 74 of 4 0.60Down
Virgin spermatheca94 ± 34 of 4 0.42Down
Mated spermatheca123 ± 74 of 4 0.55Down
Adult carcass172 ± 64 of 4 0.80Down
Larval CNS197 ± 84 of 4 0.88None
Larval Salivary gland257 ± 94 of 4 1.15None
Larval midgut210 ± 74 of 4 0.94None
Larval tubule137 ± 44 of 4 0.60Down
Larval hindgut282 ± 104 of 4 1.25Up
Larval fat body103 ± 64 of 4 0.50Down
Larval trachea188 ± 74 of 4 0.84None
Larval carcass246 ± 94 of 4 1.10None
S2 cells (growing)391 ± 44 of 4 1.74Up
Whole fly224 ± 134 of 4

Looking for CG2658-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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