FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG2662-RA through 18771 annotations produced 1 hits

shrunken nuts (CG2662):

Annotation Number : CG2662
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024993
Gbrowse : chrX:2592736-2594951 (+) // 100.0 //
Probeset : 1639999_at
Accessions : protein= NP_570018;, nucleotide= NM_130662;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0024993.
BDGP gene expression has embryonic in situ data for EG:100G10.6: 14 pix of staining in 18 body parts.
VDRC has 3 RNAi stocks for FBgn0024993 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	54 ± 3	4 of 4	0.80	Down
Head	24 ± 0	4 of 4	0.30	Down
Eye	16 ± 1	4 of 4	0.22	Down
Thoracicoabdominal ganglion	45 ± 2	4 of 4	0.60	Down
Salivary gland	43 ± 4	4 of 4	0.59	Down
Crop	24 ± 1	4 of 4	0.30	Down
Midgut	34 ± 2	4 of 4	0.50	Down
Tubule	20 ± 0	3 of 4	0.30	Down
Hindgut	73 ± 4	4 of 4	1.00	None
Heart	8 ± 1	2 of 4	0.12	Down
Fat body	21 ± 8	4 of 4	0.30	Down
Ovary	160 ± 2	4 of 4	2.20	Up
Testis	56 ± 1	4 of 4	0.80	None
Male accessory glands	33 ± 2	4 of 4	0.50	Down
Virgin spermatheca	17 ± 1	4 of 4	0.24	Down
Mated spermatheca	17 ± 1	3 of 4	0.24	Down
Adult carcass	26 ± 2	3 of 4	0.40	Down
Larval CNS	64 ± 10	4 of 4	0.89	None
Larval Salivary gland	23 ± 0	4 of 4	0.32	Down
Larval midgut	20 ± 3	4 of 4	0.28	Down
Larval tubule	25 ± 2	4 of 4	0.30	Down
Larval hindgut	21 ± 1	4 of 4	0.30	Down
Larval fat body	27 ± 2	4 of 4	0.40	Down
Larval trachea	25 ± 4	4 of 4	0.36	Down
Larval carcass	25 ± 1	4 of 4	0.35	Down
S2 cells (growing)	42 ± 2	4 of 4	0.58	Down
Whole fly	72 ± 6	4 of 4

Looking for CG2662-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720