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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG2663-RA through 18771 annotations produced 1 hits


alpha tocopherol transfer protein (CG2663):

Annotation Number : CG2663
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037323
Gbrowse : chr3R:1226543-1229851 (-) // 100.0 //
Probeset : 1631323_a_at
Accessions : protein= NP_649535; /// NP_730931;, nucleotide= NM_141278; /// NM_169053;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008431 // vitamin E binding // inferred from
FlyMine data for FBgn0037323.
BDGP gene expression has embryonic in situ data for CG2663: 25 pix of staining in 6 body parts.
Homophila reports that CG2663 is a close match (1e-14) to human gene AVED;TTP1;TTPA (NP_000361), a gene associated with Ataxia with isolated vitamin E deficiency, 277460 (3).
VDRC has 1 RNAi stocks for FBgn0037323 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head9 ± 11 of 4 0.20Down
Eye3 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland10 ± 20 of 4 0.21Down
Crop3 ± 10 of 4 0.10Down
Midgut5 ± 20 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.10Down
Heart3 ± 10 of 4 0.07Down
Fat body6 ± 40 of 4 0.12Down
Ovary1 ± 00 of 4 0.00Down
Testis2 ± 10 of 4 0.00Down
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca5 ± 10 of 4 0.10Down
Mated spermatheca7 ± 10 of 4 0.14Down
Adult carcass22 ± 33 of 4 0.40Down
Larval CNS3 ± 20 of 4 0.07Down
Larval Salivary gland3 ± 20 of 4 0.07Down
Larval midgut6 ± 10 of 4 0.12Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body7 ± 10 of 4 0.10Down
Larval trachea108 ± 444 of 4 2.14None
Larval carcass18 ± 52 of 4 0.36Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly50 ± 54 of 4

Looking for CG2663-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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