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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2668-RA through 18771 annotations produced 1 hits



Protein ejaculatory bulb (Peb):

Annotation Number : CG2668
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004181
Gbrowse : chr2R:21062863-21064238 (-) // 100.0 //
Probeset : 1640401_at
Accessions : protein= NP_611995;, nucleotide= NM_138151;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0004181.
BDGP gene expression has embryonic in situ data for Peb: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0004181 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 02 of 4 0.00Down
Eye7 ± 12 of 4 0.00Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland9 ± 30 of 4 0.00Down
Crop6 ± 10 of 4 0.00Down
Midgut8 ± 10 of 4 0.00Down
Tubule4 ± 10 of 4 0.00Down
Hindgut7 ± 11 of 4 0.00Down
Heart7 ± 11 of 4 0.00Down
Fat body7 ± 11 of 4 0.00Down
Ovary1 ± 00 of 4 0.00Down
Testis8 ± 11 of 4 0.00Down
Male accessory glands10 ± 10 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.00Down
Mated spermatheca8 ± 41 of 4 0.00Down
Adult carcass208 ± 2001 of 4 0.10Down
Larval CNS3 ± 10 of 4 0.00Down
Larval Salivary gland3 ± 00 of 4 0.00Down
Larval midgut17 ± 52 of 4 0.01Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut5 ± 10 of 4 0.00Down
Larval fat body4 ± 10 of 4 0.00Down
Larval trachea227 ± 4112 of 4 0.07Down
Larval carcass5 ± 10 of 4 0.00Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly3071 ± 2334 of 4

Looking for CG2668-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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