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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2669-RA through 18771 annotations produced 1 hits



humpty dumpty (hd):

Annotation Number : CG2669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086695
Gbrowse : chr3R:1198312-1200353 (-) // 100.0 //
Probeset : 1632243_at
Accessions : protein= NP_649531;, nucleotide= NM_141274;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
FlyMine data for FBgn0086695.
VDRC has 2 RNAi stocks for FBgn0086695 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 14 of 4 0.20Down
Head12 ± 21 of 4 0.10Down
Eye12 ± 14 of 4 0.13Down
Thoracicoabdominal ganglion23 ± 14 of 4 0.20Down
Salivary gland15 ± 40 of 4 0.16Down
Crop11 ± 21 of 4 0.10Down
Midgut14 ± 10 of 4 0.20Down
Tubule30 ± 24 of 4 0.30Down
Hindgut8 ± 10 of 4 0.10Down
Heart4 ± 10 of 4 0.05Down
Fat body10 ± 10 of 4 0.11Down
Ovary273 ± 14 of 4 2.90Up
Testis9 ± 11 of 4 0.10Down
Male accessory glands12 ± 31 of 4 0.10Down
Virgin spermatheca15 ± 13 of 4 0.16Down
Mated spermatheca16 ± 31 of 4 0.17Down
Adult carcass13 ± 10 of 4 0.10Down
Larval CNS45 ± 44 of 4 0.48Down
Larval Salivary gland52 ± 74 of 4 0.55Down
Larval midgut14 ± 01 of 4 0.15Down
Larval tubule14 ± 10 of 4 0.10Down
Larval hindgut29 ± 14 of 4 0.31Down
Larval fat body12 ± 10 of 4 0.10Down
Larval trachea34 ± 74 of 4 0.36Down
Larval carcass22 ± 14 of 4 0.24Down
S2 cells (growing)60 ± 34 of 4 0.64Down
Whole fly95 ± 44 of 4

Looking for CG2669-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime