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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2670-RA through 18771 annotations produced 1 hits



chr3R:3733054-3735445 (+) // 100.0 // (TBP-associated factor 55kD):

Annotation Number : CG2670
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640551_at
Accessions : protein= , nucleotide= NP_001138023; /// NP_649748;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter
FlyMine data for full length.
BioGrid reports that CG2670 interacts with CG2930 CG6703 CG32016 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 24 of 4 1.40Up
Head19 34 of 4 0.70None
Eye22 14 of 4 0.77None
Thoracicoabdominal ganglion31 34 of 4 1.10None
Salivary gland28 20 of 4 0.97None
Crop26 24 of 4 0.90None
Midgut20 24 of 4 0.70Down
Tubule15 02 of 4 0.50Down
Hindgut16 04 of 4 0.60Down
Heart13 14 of 4 0.46Down
Fat body13 11 of 4 0.48Down
Ovary89 34 of 4 3.10Up
Testis15 14 of 4 0.50Down
Male accessory glands23 13 of 4 0.80None
Virgin spermatheca29 24 of 4 1.01None
Mated spermatheca25 24 of 4 0.88None
Adult carcass14 30 of 4 0.50Down
Larval CNS67 104 of 4 2.34Up
Larval Salivary gland27 24 of 4 0.94None
Larval midgut13 13 of 4 0.45Down
Larval tubule18 14 of 4 0.60Down
Larval hindgut21 14 of 4 0.74Down
Larval fat body20 23 of 4 0.70Down
Larval trachea22 34 of 4 0.79None
Larval carcass24 44 of 4 0.86None
S2 cells (growing)21 24 of 4 0.74None
Whole fly29 24 of 4

Looking for CG2670-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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