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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2679-RA through 18771 annotations produced 1 hits



chr2R:20961189-20965196 (-) // 100.0 // (goliath):

Annotation Number : CG2679
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1627719_at
Accessions : protein= , nucleotide= NP_001163300; /// NP_523864; /// NP_726508;
Pathway : "0001707 // mesoderm formation // inferred from expression pattern /// 0006350 // transcription // inferred from electro
Interpro : DNA-dependent // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from el
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain263 ± 44 of 4 9.20Up
Head72 ± 64 of 4 2.50Up
Eye48 ± 84 of 4 1.68None
Thoracicoabdominal ganglion184 ± 124 of 4 6.40Up
Salivary gland110 ± 54 of 4 3.88Up
Crop50 ± 44 of 4 1.80Up
Midgut70 ± 54 of 4 2.50Up
Tubule89 ± 104 of 4 3.10Up
Hindgut36 ± 24 of 4 1.30None
Heart25 ± 34 of 4 0.90None
Fat body14 ± 14 of 4 0.50Down
Ovary2 ± 01 of 4 0.10Down
Testis23 ± 14 of 4 0.80None
Male accessory glands11 ± 32 of 4 0.40Down
Virgin spermatheca65 ± 24 of 4 2.28Up
Mated spermatheca89 ± 134 of 4 3.14Up
Adult carcass40 ± 14 of 4 1.40Up
Larval CNS215 ± 324 of 4 7.54Up
Larval Salivary gland79 ± 94 of 4 2.76Up
Larval midgut127 ± 174 of 4 4.46Up
Larval tubule108 ± 44 of 4 3.80Up
Larval hindgut34 ± 14 of 4 1.22None
Larval fat body361 ± 234 of 412.60Up
Larval trachea76 ± 194 of 4 2.67Up
Larval carcass55 ± 14 of 4 1.95Up
S2 cells (growing)448 ± 204 of 415.69Up
Whole fly28 ± 34 of 4

Looking for CG2679-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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