Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2681-RA through 18771 annotations produced 1 hits



(CG2681):

Annotation Number : CG2681
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024997
Gbrowse : chrX:2602716-2605701 (+) // 100.0 //
Probeset : 1625954_at
Accessions : protein= NP_570022;, nucleotide= NM_130666;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // in
FlyMine data for FBgn0024997.
BioGrid reports that CG2681 interacts with CG8811 .
VDRC has 2 RNAi stocks for FBgn0024997 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 24 of 4 0.40Down
Head129 44 of 4 1.90Up
Eye646 514 of 4 9.30Up
Thoracicoabdominal ganglion34 44 of 4 0.50Down
Salivary gland7 00 of 4 0.11Down
Crop5 10 of 4 0.10Down
Midgut596 284 of 4 8.60Up
Tubule533 474 of 4 7.70Up
Hindgut109 34 of 4 1.60Up
Heart19 12 of 4 0.29Down
Fat body13 50 of 4 0.19Down
Ovary1 10 of 4 0.00Down
Testis7 10 of 4 0.10Down
Male accessory glands5 10 of 4 0.10Down
Virgin spermatheca27 33 of 4 0.40Down
Mated spermatheca26 33 of 4 0.38Down
Adult carcass8 30 of 4 0.10Down
Larval CNS9 40 of 4 0.14Down
Larval Salivary gland4 10 of 4 0.07Down
Larval midgut400 544 of 4 5.76Up
Larval tubule52 24 of 4 0.70Down
Larval hindgut89 74 of 4 1.29None
Larval fat body3 00 of 4 0.00Down
Larval trachea12 171 of 4 0.18Down
Larval carcass6 20 of 4 0.09Down
S2 cells (growing)83 14 of 4 1.21None
Whole fly69 54 of 4

Looking for CG2681-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime