Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2684-RA through 18771 annotations produced 1 hits



factor 2 (lds):

Annotation Number : CG2684
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002542
Gbrowse : chr3R:3746155-3750211 (+) // 100.0 //
Probeset : 1634695_at
Accessions : protein= NP_524850;, nucleotide= NM_080111;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0002542.
Homophila reports that CG2684 is a close match (8e-15) to human gene ATRX;MRXHF1;SFM1;SHS;XH2;XNP (NP_612114), a gene associated with Alpha-thalassemia myelodysplasia syndrome, somatic, 300448 (3);Alpha-thalassemia/mental retardation syndrome, 301040 (3);Mental retardation-hypotonic facies syndrome, X-linked, 309580 (3).
TRiP has 1 RNAi stocks for FBgn0002542 available for purchase.
VDRC has 2 RNAi stocks for FBgn0002542 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 12 of 4 0.10Down
Head11 12 of 4 0.10Down
Eye14 14 of 4 0.08Down
Thoracicoabdominal ganglion12 23 of 4 0.10Down
Salivary gland25 43 of 4 0.14Down
Crop9 22 of 4 0.10Down
Midgut20 12 of 4 0.10Down
Tubule18 23 of 4 0.10Down
Hindgut15 14 of 4 0.10Down
Heart12 14 of 4 0.07Down
Fat body11 61 of 4 0.07Down
Ovary415 54 of 4 2.40Up
Testis176 64 of 4 1.00None
Male accessory glands6 10 of 4 0.00Down
Virgin spermatheca20 04 of 4 0.12Down
Mated spermatheca22 24 of 4 0.13Down
Adult carcass17 10 of 4 0.10Down
Larval CNS183 144 of 4 1.05None
Larval Salivary gland36 34 of 4 0.21Down
Larval midgut26 10 of 4 0.15Down
Larval tubule36 24 of 4 0.20Down
Larval hindgut34 14 of 4 0.20Down
Larval fat body54 144 of 4 0.30Down
Larval trachea95 124 of 4 0.55Down
Larval carcass54 44 of 4 0.31Down
S2 cells (growing)197 34 of 4 1.13Up
Whole fly174 54 of 4

Looking for CG2684-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime