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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2691-RA through 18771 annotations produced 1 hits



(CG2691):

Annotation Number : CG2691
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030504
Gbrowse : chrX:13513372-13518439 (-) // 100.0 //
Probeset : 1640382_at
Accessions : protein= NP_572906;, nucleotide= NM_132678;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0030504.
BioGrid reports that CG2691 interacts with CG7867 .
VDRC has 1 RNAi stocks for FBgn0030504 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain129 ± 24 of 4 0.50Down
Head106 ± 54 of 4 0.40Down
Eye106 ± 24 of 4 0.44Down
Thoracicoabdominal ganglion194 ± 74 of 4 0.80Down
Salivary gland113 ± 104 of 4 0.47Down
Crop141 ± 64 of 4 0.60Down
Midgut118 ± 54 of 4 0.50Down
Tubule110 ± 154 of 4 0.50Down
Hindgut99 ± 44 of 4 0.40Down
Heart97 ± 54 of 4 0.41Down
Fat body158 ± 244 of 4 0.66Down
Ovary508 ± 94 of 4 2.10Up
Testis76 ± 54 of 4 0.30Down
Male accessory glands232 ± 134 of 4 1.00None
Virgin spermatheca155 ± 114 of 4 0.64Down
Mated spermatheca252 ± 124 of 4 1.04None
Adult carcass92 ± 34 of 4 0.40Down
Larval CNS278 ± 294 of 4 1.15None
Larval Salivary gland234 ± 254 of 4 0.97None
Larval midgut89 ± 84 of 4 0.37Down
Larval tubule51 ± 24 of 4 0.20Down
Larval hindgut166 ± 204 of 4 0.69Down
Larval fat body54 ± 64 of 4 0.20Down
Larval trachea319 ± 414 of 4 1.32Up
Larval carcass214 ± 534 of 4 0.89None
S2 cells (growing)233 ± 64 of 4 0.97None
Whole fly241 ± 134 of 4

Looking for CG2691-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime