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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2694-RA through 18771 annotations produced 1 hits



(CG2694):

Annotation Number : CG2694
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024991
Gbrowse : chrX:2608113-2611688 (+) // 100.0 //
Probeset : 1633835_s_at
Accessions : protein= NP_570024; /// NP_726827; /// NP_726828;, nucleotide= NM_130668; /// NM_166949; /// NM_166950;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0024991.
BDGP gene expression has embryonic in situ data for EG:100G10.8: 12 pix of staining in 4 body parts.
BioGrid reports that CG2694 interacts with CG7359 .
VDRC has 2 RNAi stocks for FBgn0024991 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 ± 23 of 4 0.30Down
Head27 ± 23 of 4 0.20Down
Eye32 ± 14 of 4 0.25Down
Thoracicoabdominal ganglion37 ± 63 of 4 0.30Down
Salivary gland53 ± 24 of 4 0.42Down
Crop57 ± 44 of 4 0.50Down
Midgut30 ± 31 of 4 0.20Down
Tubule37 ± 23 of 4 0.30Down
Hindgut50 ± 44 of 4 0.40Down
Heart39 ± 14 of 4 0.31Down
Fat body45 ± 144 of 4 0.36Down
Ovary330 ± 54 of 4 2.60Up
Testis119 ± 94 of 4 0.90None
Male accessory glands39 ± 24 of 4 0.30Down
Virgin spermatheca56 ± 94 of 4 0.44Down
Mated spermatheca73 ± 44 of 4 0.58Down
Adult carcass45 ± 30 of 4 0.40Down
Larval CNS124 ± 94 of 4 0.98None
Larval Salivary gland60 ± 34 of 4 0.48Down
Larval midgut27 ± 33 of 4 0.21Down
Larval tubule43 ± 24 of 4 0.30Down
Larval hindgut63 ± 44 of 4 0.50Down
Larval fat body82 ± 114 of 4 0.60Down
Larval trachea66 ± 44 of 4 0.52Down
Larval carcass69 ± 104 of 4 0.55Down
S2 cells (growing)91 ± 14 of 4 0.72Down
Whole fly126 ± 54 of 4

Looking for CG2694-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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